Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01809 ATGGTGGGATTGGAATTAATACCCATAGGGACCATCCTGGCTGTACTAACCAACCAGGTCTTGAAAACTGCCCATGCAGCAGCTGATGTTCTTATTGATAAGGAAAGTTTCAAGGCCGTTTCTAAGCACCTGCTTGATATTGAACCAGTTTTAAAGGAATTGCAGCTTCAAGAATTGAATGAGTCTGAAGCTGCAAGGGTTGCTCTGGAGTCGCTTGAAACAGATGTTAAAAGGGCTCATAATTTGGTTGAGAAGTGCAGAAACCGCGGTCGTTTCTACTTACTGGTTAGGTGCAGATATATAGTTAAGGAGGTTGAAGAAGTCACAAGGGACATTGGAAAATCTCTGGCTGCATTGTCTTTGGCAAATACTGCAGTTTTGTCAAGAATTTCTGATCAGGTAAATAGACTACAGAACGAGATGCAAAGGGTGGAATTTGAGGCTTCACAGTCTCAGCTTCAAATTGTTGACAAGTTGGACCAGGGCCTTAGGGAACAGAAACGAGATCAGGCTTTTGCAAATGACATGCTTGAGGAAATAGCAAGGGCAGTTGGTGTGCCAGTGGAGCCCTCAGAGATAAGCAAAGAGCTGGCCAGcattagaaaggaaaaagaagaagctgctaacaggaaagaaagagctgaagaaatatttttggagCAGGTGATTGAGTTACTCTCTCGAGCTGATGCTGCAAGGGATTATGAAGAAGTCAAGAAGCAATACTTTGAAAGGGTTCAAGTGATAGAGCAATATGATTCAAGGGAAAGATATATCGAGccatttaattctttcttttgtagCATAACCGAAGAAGTTATGATAGATCCAGTCAGCCTTTGCACCGGCACTACATGTGAGAGATCTGCCATTCAAGATTGGTTAGACCGTGGCAACAGGACTGACCCGGAAACAAAAGAGATTCTTGAAGATACTACATTGAGGTCTAACATTTCATTGAGGCACTCCATTGAAGAATGGAGAGAACTTAATTACTGCCTTACAATTAGGTCAATCAGGGAAAACTTATTATCTGGCGCTGAATTACTTGTGCAAGAATCCCTGACCCAAATGCAGGATCTTATAAGAGAGAATTCTATTAACAAGGATTGGATCTCTATTGGACTGCTAACTGATCTTATTATCTCTATCCTTGGGAACTGTGATAACAGTGAAGTGAAGATAATGATTTTGGTTACTTTGAAGGATGCCGTAGAGGGGCATGCAAGAAACAAGGAAAAAGTGGTCGAATCTGATGGATGGGATCACATTATTAGCTGCTTGGGGAGCAAGTCTAGCATCTCAAAGGCAGCAATTGAGTTGTTGTATGAGTTAATGCAAGATCGATCTGGTTGGAATGTGTCTTTATGCAGAAAACTCTCTCATAATGGCAGTGCAGTTCGCTTCCTTGTTAGCATTATAAGGGGTCCTGTCAACGAGTCATCTGAGATTGCAGAAAAGATATTGAAAGAGCTTTTTGACGTAGATGAGGATAACATTTCTAGTGCTGCTAAGTTTGGCTGGTATAAGCCACTTGTTAATCACTTGGTTAGAGGATCAGAGTCTTCAAGAATATTAATGGCGAAAACAATAGTTAATATGGAGTTGAATGAATTAGATTTAAAACTCCTTGGTGAGGAAGGAGTTATACCACCTTTGCTTGAAATGCTGGCTGGTAGTATTGAATCAAAGGAGTTGTCATTATCTGCTCTGGTTAAATTAGCAGGTTCCTATGCCAATAAGACGACTATTTCTGCATCTGGAGGTGTTCCTCTTATCATAGAATTGATGCTCTCTGCTCGAGCGAAGACATTTATCACCATTAAATGCTCTGAAATTCTTGAGAAGCTTTCTTCCGATGATGATGGAATTGAATTCTTTGTGGATGGAGAAGGGAAACAACTTGAGTTAGATTcaattattacttatttattaagtttgcAACAGAGTCCCAGCTCAGCCCACAATGTCCGTAAGCCTGCATTGCGCGCACTTCTTGGGATTTGCAAATTTGATACAGATTTAGTTAAGAAGGCAGTCCTTGCTGCCAATGGTGTGTCTCTAATTCTTCCCCTTCTTGATGATTCAGATTCAGAAATTAGGGAGACCGCCATTAATCTGCTTTTTCTGTTCTCTCAACATGAGCCAGAAGGTGTAGTTGAATATCTTTTCAGGCCTAGAAGACTAGAGGCTTTAGTTGGATTTCTTGAGaatgatgataataatgatGTACAAATGGCTGCGGCTGGTTTACTAGCTAACCTACCAAAATCAGAAAGAGAGCTAACTAAGAACTTGATTGACTTAGGAGGACTCGACGCAATCATAAGAATCTTGGAAACTGGCACAatggaagcaaaagaaaatgctcTCAGTGCACTCTTCAGGTTCACAGATCCCACAAATATAGAGTCACAGCGTGATTTGGTCAGACTTGGAATATATCCTTTGCTTGTGAATTTTCTCACTACTGGTTCAGTTACAGCAAAGGCAAGAGCAGCTGCATTCATTGGTGATCTTTCTGTGAGCACTCCAAAACTCACGGTTGTCTCCAAAGCCACTGGTTGCTGGTGTTTCAGATCGTCACGAGTTCCTTTATGTCCAGCACATGGGAGTGTATGCAGTGTGAATACCACTTTCTGTCTGTTGGAAGCAAATGCTTTGCCTGGCTTGGTAACGCTGTTACACGGGGAGGTTCATGCAACTGCTTATGAAGCAATACAGACTCTTTCCACCTTGGTTTTGGAGGAGTACCCTCAAAGGGGAGCCCGTGTTTTGCATGAGGCAGATGCAATAACACCCATATTGGAGATTTTGATTTGGGGGTCTGATGCTCTAAAGGCAGAGGCTTTAGGACTCTTGGAGAAGGTTTTTGTGTCAAAGGAAATGGTGGAATACTACGTATCAACGGCTAGATCGCGTCTGGTTGGCCTCACCGGCAGGAGTGTTCATGGCGAAAGCCACATAAGGAGGAAGGCTGCCAAGGTATTGTCATTGCTTGAGCGCTATTCAAGGTCATCATCAGCTGCTGTTTCAGGAGTTTTAGAATA 3050 0.4052 MVGLELIPIGTILAVLTNQVLKTAHAAADVLIDKESFKAVSKHLLDIEPVLKELQLQELNESEAARVALESLETDVKRAHNLVEKCRNRGRFYLLVRCRYIVKEVEEVTRDIGKSLAALSLANTAVLSRISDQVNRLQNEMQRVEFEASQSQLQIVDKLDQGLREQKRDQAFANDMLEEIARAVGVPVEPSEISKELASIRKEKEEAANRKERAEEIFLEQVIELLSRADAARDYEEVKKQYFERVQVIEQYDSRERYIEPFNSFFCSITEEVMIDPVSLCTGTTCERSAIQDWLDRGNRTDPETKEILEDTTLRSNISLRHSIEEWRELNYCLTIRSIRENLLSGAELLVQESLTQMQDLIRENSINKDWISIGLLTDLIISILGNCDNSEVKIMILVTLKDAVEGHARNKEKVVESDGWDHIISCLGSKSSISKAAIELLYELMQDRSGWNVSLCRKLSHNGSAVRFLVSIIRGPVNESSEIAEKILKELFDVDEDNISSAAKFGWYKPLVNHLVRGSESSRILMAKTIVNMELNELDLKLLGEEGVIPPLLEMLAGSIESKELSLSALVKLAGSYANKTTISASGGVPLIIELMLSARAKTFITIKCSEILEKLSSDDDGIEFFVDGEGKQLELDSIITYLLSLQQSPSSAHNVRKPALRALLGICKFDTDLVKKAVLAANGVSLILPLLDDSDSEIRETAINLLFLFSQHEPEGVVEYLFRPRRLEALVGFLENDDNNDVQMAAAGLLANLPKSERELTKNLIDLGGLDAIIRILETGTMEAKENALSALFRFTDPTNIESQRDLVRLGIYPLLVNFLTTGSVTAKARAAAFIGDLSVSTPKLTVVSKATGCWCFRSSRVPLCPAHGSVCSVNTTFCLLEANALPGLVTLLHGEVHATAYEAIQTLSTLVLEEYPQRGARVLHEADAITPILEILIWGSDALKAEALGLLEKVFVSKEMVEYYVSTARSRLVGLTGRSVHGESHIRRKAAKVLSLLERYSRSSSAAVSGVLE 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01809 1016 Coils Coil 69 89 - -
Bva10g01809 1016 SUPERFAMILY RING/U-box 247 330 - -
Bva10g01809 1016 Gene3D - 9 123 IPR036537 GO:0007166
Bva10g01809 1016 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1012 - -
Bva10g01809 1016 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 727 755 IPR000225 GO:0005515
Bva10g01809 1016 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Bva10g01809 1016 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Bva10g01809 1016 Pfam MCAfunc domain 24 154 IPR045766 -
Bva10g01809 1016 Gene3D - 633 1010 IPR011989 -
Bva10g01809 1016 SMART arm_5 537 576 IPR000225 GO:0005515
Bva10g01809 1016 SMART arm_5 759 799 IPR000225 GO:0005515
Bva10g01809 1016 SMART arm_5 577 619 IPR000225 GO:0005515
Bva10g01809 1016 SMART arm_5 875 915 IPR000225 GO:0005515
Bva10g01809 1016 SMART arm_5 802 842 IPR000225 GO:0005515
Bva10g01809 1016 SMART arm_5 673 713 IPR000225 GO:0005515
Bva10g01809 1016 SMART arm_5 715 757 IPR000225 GO:0005515
Bva10g01809 1016 SMART arm_5 408 447 IPR000225 GO:0005515
Bva10g01809 1016 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1012 - -
Bva10g01809 1016 Coils Coil 127 154 - -
Bva10g01809 1016 SUPERFAMILY ARM repeat 458 723 IPR016024 -
Bva10g01809 1016 Gene3D - 335 629 IPR011989 -
Bva10g01809 1016 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 334 IPR013083 -
Bva10g01809 1016 Coils Coil 197 217 - -
Bva10g01809 1016 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Bva10g01809 1016 CDD RING-Ubox_PUB 265 307 IPR045210 -
Bva10g01809 1016 SUPERFAMILY ARM repeat 637 1002 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01809 Bva-Chr10 12034099 12038899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01809 262 939 U-box Gene Family AT1G20780 25.584 1.19e-35 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01809 - - gsj:114377374 1540.01