Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01776 ATGGCGGAAACTAAGAGAGGGTCGACTGCTACTGCTTCATCAGAAGGTGGTGCTGGTGAAGGGGTATCTCTAAAAGATCAGGgtaatgaatttttcaaagcaGGCAAGTATCTAAAAGCAGCTGCGCTTTATACTCAAGCCATCAAGCAAGACCCTTCAAATCCCACTCTTTATAGTAATCGTGCTGCTGCATTGCTGCAATTGGATAAGCTTAATAAAGCACTTGATGATGCTGATatgacaattaaattaaagccCCAATGGGAAAAGGGGCACTTCAGAAAGGGATGCATATTGGAGGCAATGAAACGATATGATGATGCCTTGGCTGCCTTTCAGGTGGCTTTGCAGTACAACCCACAAAGTCAAGAAGTAgctaaaaagataaagaagatAAACCAACTGATGAAAGATAGAAAGAGAGCTGAAGAAGTGGAAATCATTAGATCTAATATTGACATGGCGAAGCATTTAGATATTCTGGAACCTGAACTgTCTGGGAAGTATGGATCCGAAGAATGCGAGAAAGAGATATTCTCTTTCCTTGTTGAAACCATGGAGACAGCTGTAAAATCTTGGCATGAAACTTCTACAGTGGATGCCAGAGTCTACTTCCTTCTTGATAAGGAAAAGACGCAGACTGATAAGTATGCTCCGATTGTAAATATAGATAAGGCCTTTGAATCGCCACACACACATGGCAACtgcttttcatttattaggCAGTATGCTGAGGAATCTTTCTCCAAAGCTGCCTGCTTAGTGGCTCCCAAAAGCATAATCTCTTATCCACAGGTCTGGAAAGGCCAAGGATCAAGGAAGTGGAAGCATGGGCAGAATGATGGTTTCTTTGTTCAATTTGAGTCTCCTTCCGTGCGAAAGCTGTGGTTTATTCCCAGTTCTAATGAAATGGGACGAACATTATGCAGGAATCCAGAGGTGTTGGACATTGGTTCTCACGAAATTTTTCCTCGAATATTCAAAGAAAAGCTATCCAGTTCTTA 1004 0.3944 MAETKRGSTATASSEGGAGEGVSLKDQGNEFFKAGKYLKAAALYTQAIKQDPSNPTLYSNRAAALLQLDKLNKALDDADMTIKLKPQWEKGHFRKGCILEAMKRYDDALAAFQVALQYNPQSQEVAKKIKKINQLMKDRKRAEEVEIIRSNIDMAKHLDILEPELSGKYGSEECEKEIFSFLVETMETAVKSWHETSTVDARVYFLLDKEKTQTDKYAPIVNIDKAFESPHTHGNCFSFIRQYAEESFSKAACLVAPKSIISYPQVWKGQGSRKWKHGQNDGFFVQFESPSVRKLWFIPSSNEMGRTLCRNPEVLDIGSHEIFPRIFKEKLSSS 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01776 334 SUPERFAMILY TPR-like 23 132 IPR011990 GO:0005515
Bva10g01776 334 Pfam TPR repeat 28 68 - -
Bva10g01776 334 ProSiteProfiles TPR repeat profile. 21 54 IPR019734 GO:0005515
Bva10g01776 334 ProSiteProfiles TPR repeat profile. 89 122 IPR019734 GO:0005515
Bva10g01776 334 Gene3D Tetratricopeptide repeat domain 21 134 IPR011990 GO:0005515
Bva10g01776 334 Pfam Tetratricopeptide repeat 90 121 IPR013105 -
Bva10g01776 334 MobiDBLite consensus disorder prediction 1 16 - -
Bva10g01776 334 PANTHER STRESS-INDUCED-PHOSPHOPROTEIN 1 23 330 - -
Bva10g01776 334 SMART tpr_5 55 88 IPR019734 GO:0005515
Bva10g01776 334 SMART tpr_5 89 122 IPR019734 GO:0005515
Bva10g01776 334 SMART tpr_5 21 54 IPR019734 GO:0005515
Bva10g01776 334 MobiDBLite consensus disorder prediction 1 23 - -
Bva10g01776 334 PANTHER TPR REPEAT CONTAINING PROTEIN 23 330 IPR045248 GO:0006457|GO:0030544|GO:0051879
Bva10g01776 334 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01776 Bva-Chr10 11774539 11779968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01776 24 132 U-box Gene Family AT3G07370 27.523 2.42e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01776 - - gmx:100790717 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01776 10 11774539 11779968 Bva10g01776 10 11774539 11779968 ECH