Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01774 ATGGCCGTCGGGAAGAACAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAGGCTGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCTGTCTTCCAAGTTAAAAATGTGGGCAAGACCCTTGTCACTCGTACTCAGGGGACCAAGATTGCTTCTGAAGGGCTTAAACATAGAGTTTTTGAAGTCTCGCTGGCTGATCTTCAAGGTGATGAGGATCATGCATTCAGGAAGATTAGATTGAGAGCTGAGGATGTACAAGGGAGGAATGTTCTGACAAATTTCTGGGGTATGGATTTTACCACTGACAAGTTGAGGTCATTGGTGCGGAAATGGCAAACTTTAATAGAAGCTCATGTAGATGTGAAGACTACTGATAACTACACATTGAGAATGTTCTGCATTGGGTTTACTAAGAGACGTGCAAACCAGGTGAAGAGGACCTGTTATGCACAAGCAAGCCAGATTAGacagATCCGCAGGAAGATGAGGGAGATCATGACTAACCAGGCTACATCCTGTGATTTGAAAGAGTTGGTGCGCAAGTTCATTCCTGAGATGATCGGAAAAGAGATTGAGAAAGCTACCTCCAGCATTTACCCTCTACAAAATGTGTTCGTTAGGAAAGTCAAGATCTTGAAAGCTCCTAAGTTTGATCTTGGAAAACTGATGGAGGTTCATGGTGATTATTCAGAAGATGTTGGACAGAAGGTAGACAGACCTGCTGATGAAACAATGGCTGAGGGAACCACCGAAGTTGTTGGAGCTTG 785 0.4433 MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQGDEDHAFRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGFTKRRANQVKRTCYAQASQIRQIRRKMREIMTNQATSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFVRKVKILKAPKFDLGKLMEVHGDYSEDVGQKVDRPADETMAEGTTEVVGA 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01774 261 Pfam Ribosomal S3Ae family 16 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Bva10g01774 261 SMART Ribosomal_S3Ae_2 15 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Bva10g01774 261 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 261 - -
Bva10g01774 261 MobiDBLite consensus disorder prediction 1 20 - -
Bva10g01774 261 MobiDBLite consensus disorder prediction 1 15 - -
Bva10g01774 261 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 261 - -
Bva10g01774 261 Hamap 40S ribosomal protein S1 [RPS3A]. 1 258 IPR027500 GO:0003735|GO:0005840|GO:0006412
Bva10g01774 261 ProSitePatterns Ribosomal protein S3Ae signature. 61 73 IPR018281 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01774 Bva-Chr10 11763844 11766766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01774 1 261 Cytoplasmic Ribosomal Protein Gene Family AT4G34670 85.878 1.14e-163 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01774 K02984 - gmx:100813273 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01774 10 11763844 11766766 Bva10g01774 10 11763844 11766766 ECH