Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01721 ATGGATCCGAGCATGAGATCGGGTGGCCCTTCTGGGGTTCTGGTTAAGAACAGGAACTCTTCGGGTTGTTTAATTGTGAGGAAGAAAGGGGAAGGGTCGGGTGGCGGGGTTGGTTCTTCTAGCTCACGGAAGCTGTATGAATCAAAGAAGGTAAAGAAAAGACCTAGTGTGCCTTTGAGTGATTCAGGGTCAAGCGACGAGCTACCGATGCCTCCTAGTAGAAGGCTTGGTCCTGAGACTATTCGAGTCTGTAATGGTTTGACTGCTTTTGAACGGGACATGGTAGAAGGGAGTGAAATTGCTAGAAAGAGGGATAAAATGGAGCAAATTAGGCGTAATGAGGATGGATTCATTGACAGGAATGGTTTAGAGGAGAGGGAAAGAAAACGGACTAAGTTGAAtgtgtttgattttgatgaatatGATGGTATTGATGCCGAAACTATGCGAAGGAGGCATTTTGATGATAATGGAGTTGGGTTTGGAGGAAGAAGGTTTATGGGATCAATGCATGCTGCTAGAAGTGGCTTTGAGAGGGACTATGAAACAGGGTCAAGCAGACACATtcttgaaaagagaaaaaacccCTATTATGGGAGGGGAAGTGGCTTGTATCTGGGTGACAATGTTGATCAAAGCCGATACAAAATGAACAGGGATGGAGCTCAACTACCTCTACCATTGTTGAGAGAAAAGTTCATGGGTAATTCAGATGAATCCATTCGGGTTCAAGGGAAAAATGGTGTTTTAAAGGTGATggttaagaagaagaaggtagGTGGACCACTAGAACACTATGATCACCGCAAACCTGTGGAAAGTAGACAGAATATGAGGACTGAGGGCATCCCTAAGAAGAATCTTCTGATTCATCCTTCATCGTACTCGGAAATAAAACTTGCTGAGAAACAAGGTGTAGCTGTTAGGCCAGAGAAAAAGCAGATAACATCAAGAAAATCATTGTCAAGTAAGGACACTAAGGGCGATGAAGAGAATTCGGAAGACAGTGACACTTCATTGAATCTGGGACTAAAAAATAGTGAAGCTCGTAAGTCTGTGAACAGGATAAATTCTGAAGAGGAACAGACTCCTTTGCATGATAAGCTCCCAActacaaaaatgaaagaaggaaaagtcAGACGTGGTCGTGGCACAGAGAAACAAAAACTGCGTGAACGGATAAGGGAAATGCTGTTGAATGCCGGTTGGACTATTGACTATCGACCTAGAAGGAATAGAGACTACCTAGATGCAGTTTACATCAATCCAGGGGGTACAGCCTATTGGTCAATCATCAAAGCCTATGATGCATTACAAAAGCAATTGAATGATGCTAATAACAAGCCCAAGCCCAAGGGAGATGGTTCTTCCTTTGCTCCTATCTCAGATGAGGTTCTCAGTCAATTGACTAGGAAAACCCGAAAAAAGATGgagaaagaattgaaaaagaagcaaagagATGGTAGTGATAGTGACAGTGGGAAAGAACCTGACTTTAGAAGATCTGCAAGTAACAAGCTTGATGTGGACAGCATGGATAGTGATagcaatgaagagaaattgagCTCCTTTTTAAAGCAGGGAAGTAAATCAACGAAACATAAAATTGTTGATGATGTTGTTGCCGGTTCTAGCTCTAAAGGCCAGAACTCTAGCCAGCACTCAAATGATGGCGCTGAGAAACCTTTGTCTGGAATTGATCCTCATCTGCGACATGGAAGGAAAAGCAGAAAGCACGATAGATGTACTTTGTTGGTTCGTAGTTCTGGCAAGGGAGTAAGTTCAGAATCTGATGGTTATGTTCCTTATACGGGCAAACGTACAGTCCTTTCATGGCTGATTGACTCTGGGACAGGGCAGTTAAGTCAAAAGGTTCAATACCGCAGAAGAAAGAGAGTAATGCTGGAGGGGTGGATCACAAGAGATGGCATTCATTGTGGCTGCTGTAGTAAAATCCTTACAGTTTCCAAGTTTGAGATTCATGCAGGAAGCAAAATAAGGCAGCCGtttcaaaacatatatttgGATTCTGGAGTGTCTCTCCTACAGTGCCAGATAGATGCTTGGAATAGACAAGAGGATGCTGAAAAAATTAGTTTCCATCCAGTAGATACTGATGGTGATGATCCAAATGATGATACTTGTGGTATATGTGGAGATGGTGGGGATCTTATGTGTTGTGATGGCTGTCCATCAACGTTTCATCTGAGTTGCTTGAATATACAgATGCTTCCCCCTGGTGACTGGCATTGTCCAAACTGTACCTGCAAATATTGTGGAATAGCCAGCAGAAGTACTAAAAAGGGAGATGATGCAACTGGATATGCACTTCATACTTGCAACATATGCGAGAAAAAATACCATGAGGCGTGCACTAAGGAGATGGATGCCCTTCCTGTTACTCCCAATAGTCCAGTTCCTTCCTTTTGTGGAAAAGATTGCAAAGAGcTTTTTGAGCATTTGAAGAAGTATCTTGGTACCAAGCATGAGCTAGAAGCAGGCTTTTCCTGGTCACTGATTCATAGAACGGATGAAGACTCAGAGGCAGCTAGTAGAGGAATTTCTCAGAGGGTGGAATGCAACTCCAAGCTAGCGGTTGCACTTACTGTGATGGATGAATGCTTTTTACGTGTAAATGACCGCAGGAGTGGGATCAATTTAATTCACaatgttttatataatacTGGATCAAACTTCAGTCGTTTGAATTATAGTGGCTTTTACACTGCTATTTTGGAGAGGGGTGATGAAATAATATCTGCAGCATCTATCAGGTTCCAAGGGAAAAAGTTAGCAGAGATGCCATTCATTGGAACTCGTCACATATATAGGCACCAGGGAATGTGTCGGAGGCTTTTTTCTGCCATTGAATCGGCTCTCTGTACACTCAAGGTTGAGAAACTGGTTATTCCTGCTATTGCTGAACTCGTGCACACCTGGACAACGGTTTTTGGCTTCACTCCTCTTGAGGATTCACTTAGGCAAGAAATGAGGTCATTAAATATGCTGGTCTTCCCTGGTATAGATATGTTACAGAAGCTGCTACTGGAGCAAGGAAAACTTAAGGGTAACAGAACCGCAGCAGATGCTGAGCCAACGGAAAGTGGAGACAAGCTTTTTATTAACCCTGATACTGCAAATAGATCAGATATGGATTCCTCAGCTCAGCAAGATCCTCATGGAAGTGATGATGCCGACTCACATCCTGCTAACGAAGCAACTGAAGAAAGTAGTGACACTTCTCATGAAGTCAATAATCAACTTTTAGTTGATGGGACTATATCTTCTAGATCTCGTCCTAGGGAAGGGTTAGTTGACTCAGTTTCAGAAAAATCTGCTTCTCCTTCTAGTACTAGTCATTGTGTAGTAGAGGAGGAAAATAAAGCAGTGCTGGCTTCTCCCGTCAAAGATGATTTACATTGCTCTCCAAAATGTCAAGGTTTTTCTCAAAACGATGCTTCTCTGGGTAGTCATCCCTTAGAAGCTCCTGATTCCCTTGAAAATCCAGCTTTGGTTGAAGGGACTGCTTGTTCTGACCCTGATTCAGTGGAAAAACTTGTTGAATCTTGTCCCACTGCCATGAATTGTGATCCATCAGAGCTTGAGACTTTCCCAGTATCAGATTCTCAAGTTGCAGATAATGCTATGTCTTCTAAAGATGATGATATAAATGATGCCCATGGGGCTCTTGAAACTGTTCCTGCCATGGGGGGTTCATCTGAAGATGTTACTGAAGGGATCAATGGAAATGTACATGTTTCTGGTTCCATTGGCAACCATGCCGAAAAAAGTTCCCTGCAGATGAGATCTAATTTGAATGGTGAAGTTGCATATGGAACAGAAAGAAAGTTAGATAAGGGAACAGAAGTTGGTTCTAATGAAATTGATTCTGTTGAAAGTGGGCTTGATGCATCTGATGAAGGTGATAGTTCAGAAACTGATTCAATGTA 3950 0.4106 MDPSMRSGGPSGVLVKNRNSSGCLIVRKKGEGSGGGVGSSSSRKLYESKKVKKRPSVPLSDSGSSDELPMPPSRRLGPETIRVCNGLTAFERDMVEGSEIARKRDKMEQIRRNEDGFIDRNGLEERERKRTKLNVFDFDEYDGIDAETMRRRHFDDNGVGFGGRRFMGSMHAARSGFERDYETGSSRHILEKRKNPYYGRGSGLYLGDNVDQSRYKMNRDGAQLPLPLLREKFMGNSDESIRVQGKNGVLKVMVKKKKVGGPLEHYDHRKPVESRQNMRTEGIPKKNLLIHPSSYSEIKLAEKQGVAVRPEKKQITSRKSLSSKDTKGDEENSEDSDTSLNLGLKNSEARKSVNRINSEEEQTPLHDKLPTTKMKEGKVRRGRGTEKQKLRERIREMLLNAGWTIDYRPRRNRDYLDAVYINPGGTAYWSIIKAYDALQKQLNDANNKPKPKGDGSSFAPISDEVLSQLTRKTRKKMEKELKKKQRDGSDSDSGKEPDFRRSASNKLDVDSMDSDSNEEKLSSFLKQGSKSTKHKIVDDVVAGSSSKGQNSSQHSNDGAEKPLSGIDPHLRHGRKSRKHDRCTLLVRSSGKGVSSESDGYVPYTGKRTVLSWLIDSGTGQLSQKVQYRRRKRVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKIRQPFQNIYLDSGVSLLQCQIDAWNRQEDAEKISFHPVDTDGDDPNDDTCGICGDGGDLMCCDGCPSTFHLSCLNIQMLPPGDWHCPNCTCKYCGIASRSTKKGDDATGYALHTCNICEKKYHEACTKEMDALPVTPNSPVPSFCGKDCKELFEHLKKYLGTKHELEAGFSWSLIHRTDEDSEAASRGISQRVECNSKLAVALTVMDECFLRVNDRRSGINLIHNVLYNTGSNFSRLNYSGFYTAILERGDEIISAASIRFQGKKLAEMPFIGTRHIYRHQGMCRRLFSAIESALCTLKVEKLVIPAIAELVHTWTTVFGFTPLEDSLRQEMRSLNMLVFPGIDMLQKLLLEQGKLKGNRTAADAEPTESGDKLFINPDTANRSDMDSSAQQDPHGSDDADSHPANEATEESSDTSHEVNNQLLVDGTISSRSRPREGLVDSVSEKSASPSSTSHCVVEEENKAVLASPVKDDLHCSPKCQGFSQNDASLGSHPLEAPDSLENPALVEGTACSDPDSVEKLVESCPTAMNCDPSELETFPVSDSQVADNAMSSKDDDINDAHGALETVPAMGGSSEDVTEGINGNVHVSGSIGNHAEKSSLQMRSNLNGEVAYGTERKLDKGTEVGSNEIDSVESGLDASDEGDSSETDSM 1316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01721 1316 Pfam PHD-finger 715 757 IPR019787 -
Bva10g01721 1316 Pfam Tify domain binding domain 637 687 IPR032308 -
Bva10g01721 1316 MobiDBLite consensus disorder prediction 1232 1316 - -
Bva10g01721 1316 ProSiteProfiles Zinc finger PHD-type profile. 712 757 IPR019787 -
Bva10g01721 1316 MobiDBLite consensus disorder prediction 1300 1316 - -
Bva10g01721 1316 MobiDBLite consensus disorder prediction 301 388 - -
Bva10g01721 1316 MobiDBLite consensus disorder prediction 443 529 - -
Bva10g01721 1316 SUPERFAMILY FYVE/PHD zinc finger 705 760 IPR011011 -
Bva10g01721 1316 MobiDBLite consensus disorder prediction 543 559 - -
Bva10g01721 1316 MobiDBLite consensus disorder prediction 1025 1123 - -
Bva10g01721 1316 MobiDBLite consensus disorder prediction 1040 1056 - -
Bva10g01721 1316 MobiDBLite consensus disorder prediction 1243 1274 - -
Bva10g01721 1316 MobiDBLite consensus disorder prediction 261 280 - -
Bva10g01721 1316 CDD PHD2_CHD_II 715 754 - -
Bva10g01721 1316 MobiDBLite consensus disorder prediction 304 334 - -
Bva10g01721 1316 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1151 - -
Bva10g01721 1316 MobiDBLite consensus disorder prediction 1 20 - -
Bva10g01721 1316 SMART PHD_3 714 755 IPR001965 -
Bva10g01721 1316 SMART PHD_3 758 815 IPR001965 -
Bva10g01721 1316 MobiDBLite consensus disorder prediction 468 520 - -
Bva10g01721 1316 MobiDBLite consensus disorder prediction 25 79 - -
Bva10g01721 1316 MobiDBLite consensus disorder prediction 542 581 - -
Bva10g01721 1316 ProSitePatterns Zinc finger PHD-type signature. 715 754 IPR019786 -
Bva10g01721 1316 MobiDBLite consensus disorder prediction 352 388 - -
Bva10g01721 1316 MobiDBLite consensus disorder prediction 1080 1094 - -
Bva10g01721 1316 PANTHER PHD FINGER FAMILY PROTEIN 1 1151 - -
Bva10g01721 1316 MobiDBLite consensus disorder prediction 1057 1079 - -
Bva10g01721 1316 MobiDBLite consensus disorder prediction 1109 1123 - -
Bva10g01721 1316 MobiDBLite consensus disorder prediction 261 288 - -
Bva10g01721 1316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 703 806 IPR013083 -
Bva10g01721 1316 MobiDBLite consensus disorder prediction 337 351 - -
Bva10g01721 1316 Coils Coil 467 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01721 Bva-Chr10 11486209 11494752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01721 6 1080 PHD Transcription Factor Family AT4G14920 48.713 0.0 931
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva10g01721 TDBD 3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01721 - - ccaj:109804483 1623.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01721 10 11486209 11494752 Bva10g01721 10 11486209 11494752 ECH