Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01684 ATGGTCTTGCCTCAGCTTGAGTCCATCGACCATGCCCAGAAGACCAAGACACTGATTTGTGCCCTCAACCTTGTTTCCCGCAACCTCCCGCTCCCTCCCGACCTCTTTCACACCGTTTCTTCCATCTATCATGGCGCACAAAGCTCTGCAACTGATGCCCAACAATGCGGGGCTCATGTTGACATTACCAGTGCTGCTGGATCTAACGAGGGAACCGTGGATGTGGATAGCCAGAAGGGTTTGGATGGCTTAGGGAATTCtaaaatagatttattaaCAGAGTTTGAAGATGCACTGTTGAAGCAACGCTTGAATTGTGTGTCAGGTTTCAAATTGAAGGAAACATGGGAAAATCGTTATCAAAGTCAGATTCAACATCGGTTAAATGAGCTTGAAGAGTTGCCTTCAAGCAGGGGAGAGGATCTGCAGACAAAGTGCCTGCTTGAATTATATGGACTAAAGCTAGCAGAGTTGCAGAGGAAGGTCAGGTCTGAAGTGAGTTCTGAATACTGGCTCAATGTTTTATGTGCCTATCCTGATAGGCAATTGTTTGATTGGGGCATGATGCGGCTGCACCGTCCACTATATGGTGTTGGAGATCCATTCTCTATGGATGCCGATGATCaactaagaaagaaaagggatgCTGAGAGACTGTCAAGATTagaagaggaggaaaaaaatcatatagaaaccagaaaaagaaaattttttgcaGAAATACTGAATGCTGTCCGTGAGTTCCAATTACAACTGCAAGCTTCTTTGAGACGGAGAAAACAGAGAAATGACGGTGTTCAGGCTTGGCATGGAAGGCAAAGACAGCGTGCAACACGGGCAGAGAAATTGAGATTCCAAGCCTTAAAGGCTGATGATCAAGAAGCATACATGAGAATGGTGAAGGAGAGCAAGAATGAAAGACTGACTTTGCTTCTGGAAGAAACTAATAAACTACTTGTAAATTTGGGAGCAGCTGTTCAACGTCAAAAAGACTCAAAACATTTGGATGGCATTGAACCCTTGGATGATTCTGAAGCTGACTTACCAGAGTCAGATGCTTCAAAGAATGGAATTACTAAGGAATCTCCTTCTGAGGAAGATATGGACGTTACAGATTCTGATCATAATGGTGATGATAGTGATTTACTTGAAGGTCAAAGGCAATACAACTCTGCCatccattcaattcaagaaaagGTAACTGAGCAACCATCTTGTCTTCAAGGTGGAGAACTAAGGCCATACCAGATAGAAGGGCTCCAGTGGatgctttctttgtttaataaCAATCTAAATGGAATTTTGGCTGATGAAATGGGGCTAGGGAAGACAATACAAACCATTTCATTGATAGCATATCTTATGGAAAATAAGGGTGTGACTGGTCCGTACTTGATTGTGGCTCCAAAAGCTGTTCTTCCAAATTGGATCAGTGAATTCTCAACATGGTGTCCTAGCATTATAACTGTTCTTTATGATGGACGGCTGGATGAGAGGAAAGCCATGAAGGAAGAATTGTCAGGGGAGGGAAAATTTAATGTTCTGATAACGCACTATGATCTTATCATGAGAGATAAAGCCTTCCTCAAGAAATTTCACTGGTACTACTTAATTGTAGACGAAGGACATCGGTTGAAGAATCACGAGTGTGCTCTAGCAAGAACCCTTGATTCCAGCTATAACATCCAACGCAGACTCCTCTTGACTGGAACTCCAATTCAAAATACTTTACAGGAATTGTGGTCCTTGCTTAATTTTCTACTtccaaacatttttaattcagTTCAAAATTTCGAGGACTGGTTTAATGCCCCCTTTGCAGATCGAGTTGATGTCTCACTAACAGATGAAGAACAGCTACTGATCATTCGTCGTTTGCACCAAGTAATAAGGCCCTTCATcttaagaaggaaaaaagatgaGGTGGAAAAATATCTTCCTGGGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCATGGCAGAAAGTATATTATCAACAAGTTACTGACTCGGGCAGAGTTGGTTTAGACAATGGTTCTGGGAAATCAAAAAGCCTACAGAATCTAACAATGCAACTGAGGAAGTGTTGTAACCATCCATACCTCTTTGTGGGAGACTACAGTAATATGTGGAATAAGGACGAGATTATCAGAGCATCAGGGAAATTTGAACTCCTTGACCGCTTGCTTCCGAAACTTCGAAGAGCTGGGCACAGGGTCCTCCTTTTCTCACAAATGACTCGTCTCATGGACATTCTTGAAGTTTATCTGCGGATGCATGATTACTGTTTTCTTAGACTTGATGGCTCAACAAAAACTGAGGAAAGAGGGGCTCTACTACGAAAATTCAATGCTCCTGATTCTCCATACTTTATGTTTCTCTTGAGCACCCGTGCTGGAGGTCTTGGTCTGAACTTACAAACAGCAGATACTGTTATAATCTTTGACAGTGATTGGAACCCTCAAATGGATCAACAAGCTGAGGATCGGGCTCATCGTATTGGTCAAAAAAAGGAAGTTAGGGTTTTTGTGTTGGTTAGTGTGGGATCAATTGAAGAGGTGATTTTGGAGCGTGCAAAACAAAAGATGGGCATTGATGCTAAAGTCATCCAGGCAGGACTTTTCAACACAACTTCAACAGCTCAGGACAGAAGAGAAATGTTGGAGGAGATCATGCGTAGAGGTACAAGCTCTCTTGGGAGAGATGTACCAAGTGAAAGAGAAATCAACCGCCTTGCAGCCAGATCAGACGAGGAATTTTGGCTATTTGAGAAAATGGATGAAGAGAGAAGGCAAAAGGAGAACTACCGATCTCGTCTAATGGAAGAGCATGAAGTGCCTGAGTGGGTTTACTCTGCACCTAGTAAGGATGATAAACCCAAAGGTTTTGACAGTGCTGGTGTTACCGGCAagcgaaaaagaaaagatgtgGCATATTCTGATAACATGAGTGACCTACAATTTATGAAGGCAGTGGAGAATGGGGACATGCCAAGCATTCTAAgtaaagggaaaagaagagaCCGGACACCATCGTATAGTGTAGGGACAGAGGAAAGGTTACCAGAGTTAAGGAATGAAAGTGCCCCTGTCCCCATGGCAAATGACAGAACAAGTGCAGATAGCTTCCATGTCACACCGTCCCCAAAGAGACTCAAGCCTGAAGTAGCAAGCAGCCCGAGACATGAACCTGAGAGTGTCAGTGGAGGTGGTTTGAATGAGCATGTGTTTTCCTGGAATACTCACAGGAAGAAGAGATCAAGCTATGTTGCCCAGGGTCCATTGTCTGATTCTAGAGGACAGAATTCAAATGGAAGATCGTATTGGAGCTG 3335 0.4105 MVLPQLESIDHAQKTKTLICALNLVSRNLPLPPDLFHTVSSIYHGAQSSATDAQQCGAHVDITSAAGSNEGTVDVDSQKGLDGLGNSKIDLLTEFEDALLKQRLNCVSGFKLKETWENRYQSQIQHRLNELEELPSSRGEDLQTKCLLELYGLKLAELQRKVRSEVSSEYWLNVLCAYPDRQLFDWGMMRLHRPLYGVGDPFSMDADDQLRKKRDAERLSRLEEEEKNHIETRKRKFFAEILNAVREFQLQLQASLRRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDSKHLDGIEPLDDSEADLPESDASKNGITKESPSEEDMDVTDSDHNGDDSDLLEGQRQYNSAIHSIQEKVTEQPSCLQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMENKGVTGPYLIVAPKAVLPNWISEFSTWCPSIITVLYDGRLDERKAMKEELSGEGKFNVLITHYDLIMRDKAFLKKFHWYYLIVDEGHRLKNHECALARTLDSSYNIQRRLLLTGTPIQNTLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDSGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYSNMWNKDEIIRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEVYLRMHDYCFLRLDGSTKTEERGALLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGRDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHEVPEWVYSAPSKDDKPKGFDSAGVTGKRKRKDVAYSDNMSDLQFMKAVENGDMPSILSKGKRRDRTPSYSVGTEERLPELRNESAPVPMANDRTSADSFHVTPSPKRLKPEVASSPRHEPESVSGGGLNEHVFSWNTHRKKRSSYVAQGPLSDSRGQNSNGRSYWS 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01684 1111 Pfam Snf2-ATP coupling, chromatin remodelling complex 930 990 IPR029295 GO:0042393
Bva10g01684 1111 MobiDBLite consensus disorder prediction 952 977 - -
Bva10g01684 1111 PANTHER SNF2/RAD54 HELICASE FAMILY 10 1033 - -
Bva10g01684 1111 Coils Coil 927 947 - -
Bva10g01684 1111 MobiDBLite consensus disorder prediction 1084 1111 - -
Bva10g01684 1111 Gene3D - 643 943 IPR027417 -
Bva10g01684 1111 SMART SnAC_2 929 990 IPR029295 GO:0042393
Bva10g01684 1111 MobiDBLite consensus disorder prediction 1001 1026 - -
Bva10g01684 1111 Pfam Helicase conserved C-terminal domain 723 836 IPR001650 -
Bva10g01684 1111 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 639 890 IPR027417 -
Bva10g01684 1111 CDD SF2_C_SNF 714 847 - -
Bva10g01684 1111 SMART ultradead3 408 601 IPR014001 -
Bva10g01684 1111 MobiDBLite consensus disorder prediction 329 383 - -
Bva10g01684 1111 Pfam SNF2-related domain 415 703 IPR000330 GO:0005524|GO:0140658
Bva10g01684 1111 PANTHER ATP-DEPENDENT HELICASE BRM 10 1033 - -
Bva10g01684 1111 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 424 590 IPR014001 -
Bva10g01684 1111 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 388 637 IPR027417 -
Bva10g01684 1111 SMART helicmild6 752 836 IPR001650 -
Bva10g01684 1111 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 726 893 IPR001650 -
Bva10g01684 1111 MobiDBLite consensus disorder prediction 998 1111 - -
Bva10g01684 1111 Gene3D - 382 636 IPR038718 -
Bva10g01684 1111 MobiDBLite consensus disorder prediction 359 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01684 Bva-Chr10 11237035 11245520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01684 698 864 RAD5 or RAD16-like Gene Family AT5G43530 34.503 7.33e-21 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bva10g01684 SNF2_N 2.1e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01684 - - gmx:100786280 1760.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01684 10 11237035 11245520 Bva10g01684 10 11237035 11245520 ECH