Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01676 ATGGATACTTTTTCAGCTGCACAGCTTCTTCCACTTTCCCCTGTCATTTCCTTTGATAAGCCAATTCCTTCTTGTTTACCATTTCATTCACAGAACCGTTGTCTAAGATTCTTTTGCCCCACTAACCGGAATAACTCTGCTATCTACCTTATATCCAAGCTCAGAATTTCACATGCTGTTCTAGGAAATTCTTATATAACCCATGAATCGAATGATGTAGTGGGCAATCCCACACTAAGAGAAATATGCAGAGCTCACGTTCCCGAGCATATATTGGACAGGATGGAAGAGATTGGATATGTTATGCCTACAGATGTCCAGCAGCAAGCATTGCCTACTCTTTTTTCTGGACGAGATTGTATACTTCATGCTCAGaCAGGTTCTGGGAAGACACTTGCTTACCTCCTTTTGATATATTCTGTCATAAAGACTACAAAATCTGTGCAAGCAATAGTTGTGGTACCCACTCGTGAACTTGGGATGCAAGTCACAAAAGTTGCTAGGATGTTGGCTGCAAATCCAGTGGAGCTCCAGGGGGAGCAGAAGTCATGTACCATCATGGCTCTTTTAGATGGAGGGACACTGAGAAGACACAAGAGTTGGCTAAAGGCAGAGCCTCCTCAACTAGTGGTAGCAACAGTGGGCAGTTTATGTCAAATGCTTGAAAGACAAATGTTTAAGCTTGAATCTGTGCGGGTACTGGTGGTTGATGAGGTTGActtcattttctattcttcAAAGCAAGTCAGTTCTCTTCGAAAGCTTTTGATGTCATATTCATCATGCAATAACCGTCAGACAGTTTTTGCCAGTGCATCTATACCACAACATAGACGATTTGTTCATGACTGTGTGCAGCAAAAATGGACTAAGAGAGATGTGGTGCACATTCATGTCAGTCCTGTTGTGCCCATGCCATCTCGCTTACATCATAGATATATAGTGTGtcacaaaaaaaggaaacaagaaacatTGTTATCCTTGATACATTCTGATGCACCTGAGTCCGCCATTATATTTGTGGCTGAGCAGTCTGAGAAGTCAAAAAAGATGGGAAATGCTCCATCTACAACTCTTCTAATTGACTTTCTAAAGACTTCATATCAAGGTTCTTTGGATATCCTTCTTCTTGAGGAAGACATGAATTTCAATTCCAGAGCCAGTTCATTGTTGGAGGTCAAGAAAGGAGGAGGCTATCTTCTTGTAGCCACAGATATAGCTGCCAGAGGAGTTGATCTTCCGGAAATGTCTCACATATACAACTTTGATCTGCCCAAGACAGCTGTAGATTATCTTCATCGTGCAGGAAGGACTTGTAGGAAACCCTTTTCTAACGTGAAATACACTGTTAGCAGCATTATAGCTCCCGAGGAGAGATTTGTTCTtcagaaatatgaaaatgagttGATGTTCAACTGTGAAGAGCTTATTCCACAAACAGCATG 1445 0.4028 MDTFSAAQLLPLSPVISFDKPIPSCLPFHSQNRCLRFFCPTNRNNSAIYLISKLRISHAVLGNSYITHESNDVVGNPTLREICRAHVPEHILDRMEEIGYVMPTDVQQQALPTLFSGRDCILHAQTGSGKTLAYLLLIYSVIKTTKSVQAIVVVPTRELGMQVTKVARMLAANPVELQGEQKSCTIMALLDGGTLRRHKSWLKAEPPQLVVATVGSLCQMLERQMFKLESVRVLVVDEVDFIFYSSKQVSSLRKLLMSYSSCNNRQTVFASASIPQHRRFVHDCVQQKWTKRDVVHIHVSPVVPMPSRLHHRYIVCHKKRKQETLLSLIHSDAPESAIIFVAEQSEKSKKMGNAPSTTLLIDFLKTSYQGSLDILLLEEDMNFNSRASSLLEVKKGGGYLLVATDIAARGVDLPEMSHIYNFDLPKTAVDYLHRAGRTCRKPFSNVKYTVSSIIAPEERFVLQKYENELMFNCEELIPQTA 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01676 481 CDD SF2_C_DEAD 309 440 - -
Bva10g01676 481 Pfam Helicase conserved C-terminal domain 321 440 IPR001650 -
Bva10g01676 481 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 49 477 - -
Bva10g01676 481 Pfam DEAD/DEAH box helicase 104 276 IPR011545 GO:0003676|GO:0005524
Bva10g01676 481 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 111 292 IPR014001 -
Bva10g01676 481 CDD DEADc 91 298 - -
Bva10g01676 481 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 321 481 IPR001650 -
Bva10g01676 481 Gene3D - 305 480 IPR027417 -
Bva10g01676 481 SMART ultradead3 99 312 IPR014001 -
Bva10g01676 481 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 58, CHLOROPLASTIC 49 477 - -
Bva10g01676 481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 444 IPR027417 -
Bva10g01676 481 SMART helicmild6 358 442 IPR001650 -
Bva10g01676 481 Gene3D - 59 292 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01676 Bva-Chr10 11174764 11180309 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01676 68 461 Eukaryotic Initiation Factors Gene Family AT3G13920 27.451 4.94e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01676 - - ahf:112763379 688.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01676 10 11174764 11180309 Bva10g01676 10 11174764 11180309 ECH