Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01675 ATGGAGAATTTCagctcctcttcttcttcaacagcTCCTTTTCATCCTGACATTCCTTCCTTTGCAGTTGCATCGTCTTCTGCATCTTTTGAAGACTCTTATGAGGACTCCTGTAGTATTTGTCTTGAGCCTTTCAGCACTGATGACCCAGCTACGGTTACCACTTGCAAACATGAGTATCATCTGCATTGTATCCTTGAATGGTCTCAAAGAAGCAAAGAGTGCCCAATATGTTGGCAGTTACTTGTCTTGAAAGATCCTGCCAGCCAAGAGCTTCTAGCTGCAGTGGAGGCTGAAAAGCGATTAAGATCAAGAAATACATACGCGTCTGCATCCACTAATTCTAGGAGCCCCCTTGAACGGCTTAATGCTGACAATGACGACTCTTATTCAGATGACTCTGATTTTGATGAACAAATTATGCAGCACTTAGTAGCTGCTGCAAGTAGAGCTCGTTATTTCCGCAGAAGGGAAAGGCAGAGATCATCTGGAGCTGGTCCTTCAGAGGTTCTTCTTTTTAACTCTGCAAATGTCTCCATGGTGCAACCTACGGTCACGACATCATCATCTGGAAGTAGTTCACCGACTTCTGATGTACCATCTATTGTTGACATCCAACCTCCACCATATGTTTTGCCCCCTGTTGTTGAAGTTGTTGCAAGAGATACCACACCTGAGAACGATGTCTCTTCAAACCCAGTTCTTTATAGCCAGTCATCCCCTGAGAGTGTGGGGAGACTGAATGCTTCTGAGATGTTCTCATTGCCCGAGTCcatcaaatccaaattttcTGCTGCTTCAGCCAGATACAAGGAATCAATTACAAAAAGCACTCGTGGCCTTAAAGAGAAGTTACTTGCTCGTAATGCCTCAGTAAAAGAGTTGAGTAAAGGTGTTCAGCGTGAGATGAATGCAGGCATTGCTGGTGTTGCACGGATGATTGAACGCCTTGATCTTACTTCAAAACGGGCCTCCAATTCTCCTCTCATTCCTAGCTTTCCTGGAGGAACTTCAAGCTTCCCCTTAAAAGGGAAGACTGTCCAGGAAAATGGTGTTGGAGAGTCCAATAGTGAAGAGACTGGTGCTGTGGTTCGTGAAGTTAGTTCAGATTCACCTTCCATAATTTCCAGCATGGTTTCTGGTCGTGCAGAAGTTCATCCTACATCTGTTCAGaaTGAACATGATGCTGTGAAGATTTA 1199 0.4304 MENFSSSSSSTAPFHPDIPSFAVASSSASFEDSYEDSCSICLEPFSTDDPATVTTCKHEYHLHCILEWSQRSKECPICWQLLVLKDPASQELLAAVEAEKRLRSRNTYASASTNSRSPLERLNADNDDSYSDDSDFDEQIMQHLVAAASRARYFRRRERQRSSGAGPSEVLLFNSANVSMVQPTVTTSSSGSSSPTSDVPSIVDIQPPPYVLPPVVEVVARDTTPENDVSSNPVLYSQSSPESVGRLNASEMFSLPESIKSKFSAASARYKESITKSTRGLKEKLLARNASVKELSKGVQREMNAGIAGVARMIERLDLTSKRASNSPLIPSFPGGTSSFPLKGKTVQENGVGESNSEETGAVVREVSSDSPSIISSMVSGRAEVHPTSVQNEHDAVKI 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01675 399 Pfam Ring finger domain 36 78 IPR001841 -
Bva10g01675 399 SMART ring_2 38 78 IPR001841 -
Bva10g01675 399 MobiDBLite consensus disorder prediction 328 387 - -
Bva10g01675 399 MobiDBLite consensus disorder prediction 105 120 - -
Bva10g01675 399 ProSiteProfiles Zinc finger RING-type profile. 38 78 IPR001841 -
Bva10g01675 399 MobiDBLite consensus disorder prediction 183 204 - -
Bva10g01675 399 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF1A 1 383 - -
Bva10g01675 399 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 383 - -
Bva10g01675 399 MobiDBLite consensus disorder prediction 328 399 - -
Bva10g01675 399 SUPERFAMILY RING/U-box 34 85 - -
Bva10g01675 399 MobiDBLite consensus disorder prediction 104 134 - -
Bva10g01675 399 MobiDBLite consensus disorder prediction 183 201 - -
Bva10g01675 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 83 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01675 Bva-Chr10 11170609 11174042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01675 32 86 C3H Transcription Factor Family AT4G00335 47.273 4.37e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01675 K19043 - gmx:100785684 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01675 10 11170609 11174042 Bva10g01675 10 11170609 11174042 ECH