Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01656 ATGGGAATTTCATGGAGTAGCAGtagtagaagaagaaacaattaCCTTCAAAACCCACCGCCGCCGCCCCATCATCTTCCACCCCCTTACTATTACTCTTCAGATTCTCATTCTCACCATCCTCCCCCTACGCCTCAAGGTTACTTTTTTACCTCAACAGCTCCTTATACTCATCCTAGCAATAGCTATGCCACTCCCACTCCTCTGCCACCGccacctccacctccacctGCCCAAACACATTCCTTCTATTACTCAAATGGATATAATAATTCTGCCAACTTTGCCAATCCTATGGTGGGTAGGTTTCCTTACCACCCTTATTATGTAAATCAGCCAAATGGGTGGCCTGCAATTCGTCCACCTGTTGCTCCGACTCAAACCCCACCACCCTATGTTGATCATCAAACCGCGAAGAAGATTAAGAACGACGTCAATGTGCATAAAGATACCTTGCGGCTTGAGGTCGATGAACACAATCCTGATCATCACTTGGTGTCATTTGTTTTTGATGCCATATATGATGGGAGcATTACCATCTTCTACTTTgccaaggaagaagaaaaatgtagGTTTGTTCCATTGTATCCTGATGCATTTGAGCCAGTAACAATTCCCTTTGAAAAAGGAGTTGGCCAAAGGTTTATTCAGCCTTCAGGAACAGGCATTGACTTGGGCTTCTTTGAGTTGGATGATCTCTCAAAACCATCAGCTGGAGAAGAGGTCTTCCCCCTTGTAATATGTGCTGAAACAAGAATTCCTTCAGCAGATGAAAACCTTGGTGATTCCATGCTAGATGTATCTCCTCACATGCAGATCACCCAAGCTGTTCTGGAGAGAAGTAATGGTGATGGTCCTTTCCAGGTGAAAGTTATTAGGCAGATTCTGTGGATTGATGGAATTCGTTATGAGTTAAGAGAGCTATATGGGATCGGAAGCTCATCAGAAGTAGATTTTGAGGACAATGAGCCTGGGAAGGAGTGTGTAATATGCATGACTGAACCTAAGGATACTGCTGTTTTACCTTGTCGACATATGTGTATGTGCAGTGAGTGTGCACAAGCTTTGAGgcatcaatcaaataaatgcCCTATATGCCGTCAGCCCATTGAGGAACTTATAGAGATCAAGATAAATAATGGCAACCAATG 1151 0.4092 MGISWSSSSRRRNNYLQNPPPPPHHLPPPYYYSSDSHSHHPPPTPQGYFFTSTAPYTHPSNSYATPTPLPPPPPPPPAQTHSFYYSNGYNNSANFANPMVGRFPYHPYYVNQPNGWPAIRPPVAPTQTPPPYVDHQTAKKIKNDVNVHKDTLRLEVDEHNPDHHLVSFVFDAIYDGSITIFYFAKEEEKCRFVPLYPDAFEPVTIPFEKGVGQRFIQPSGTGIDLGFFELDDLSKPSAGEEVFPLVICAETRIPSADENLGDSMLDVSPHMQITQAVLERSNGDGPFQVKVIRQILWIDGIRYELRELYGIGSSSEVDFEDNEPGKECVICMTEPKDTAVLPCRHMCMCSECAQALRHQSNKCPICRQPIEELIEIKINNGNQ 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01656 383 MobiDBLite consensus disorder prediction 64 80 - -
Bva10g01656 383 MobiDBLite consensus disorder prediction 1 83 - -
Bva10g01656 383 PANTHER MAHOGUNIN 1 382 IPR045194 GO:0061630
Bva10g01656 383 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 327 367 IPR045195 -
Bva10g01656 383 MobiDBLite consensus disorder prediction 1 15 - -
Bva10g01656 383 Pfam Zinc finger, C3HC4 type (RING finger) 326 372 - -
Bva10g01656 383 MobiDBLite consensus disorder prediction 37 63 - -
Bva10g01656 383 ProSiteProfiles Zinc finger RING-type profile. 328 367 IPR001841 -
Bva10g01656 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 377 IPR013083 -
Bva10g01656 383 PANTHER E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED 1 382 - -
Bva10g01656 383 SUPERFAMILY RING/U-box 321 373 - -
Bva10g01656 383 SMART ring_2 328 366 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01656 Bva-Chr10 11070452 11074297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01656 101 383 C3H Transcription Factor Family AT3G06140 57.860 6.53e-110 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01656 - - gmx:100786054 521.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01656 10 11070452 11074297 Bva10g01656 10 11070452 11074297 ECH