Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01619 ATGATTAAAGGAAACCTGCTGGGTGTAGAATTGGCAATAAATAATGCCAGTGGGGAGGGGCAAATGGGATCCCCGCATGAACCATTTATAGGGTTACAATTTGATTCAGCAGATGAAGCGCTTGAGTTTTACACATCATATGCAAAGCGAATTGGATTCAAGGTTCGGGTTGGTCAGCTATACAGATCAAGAACTGATGGATCAGTCTCTTCTCGAAGATATGTGTGCTCAAAAGAGGGATATCAGCTTAGTTCAAGAACAGGTTGTCCTGCATTCCTAAGAGTACAAATACGTGATTCTGGTAAATGGGTTGTTGATCATTTCCTGAAGGACCACAATCATGATCTTGAACTTGAAGGTGAAGAGTTCCCTCCTATTTTGCCACAGAAGAGTCTTACAgctttaaaatcttttactGATGCAACCcgcaaatcaaagaaaaaattgctgGTGGCATTCAAGGATGATAGCTCTTGTCCCTTTGGCATTTACAAGCGGCATAGAAGGGAAGGAGATGAAGGACAGTCCACGGTTGTACCATATCTTGGCAAAGAGTTCAGTTCAGTCAATGAAGCTTACGAATTTTATCATGCATATGCAGTTTATGCAGGATTTAGAATTCGTATCGGTCAATTATTTCGATCTAAGAATGATGGGATGATTATATCACGACGATTTGTGTGTGCAAAAGAGGGTTTTCAGCACCCTTCAAGAGTTGGTTGTGCGGCATATTTGAGGATTAAGAGAGAACCATCTGGAAAGTGGGTTATTGACCGTCTTCAAAAAGATCATAATCATACTCTGGACTCTGAGGAGGAGGATAGACAAAATGGTTTTCCTGCTTCAAGTATTTTGACAGAGGAGGTAAACTCTGGATTAGGAAACTTTAACTTTAACTACACTATCTCTAAAAGAAGtagagaaaatcaaattaacaGTGTTTGGTACAGTCTGCTTTCTGAATATTTTCAATCAAGGCAAGCAGAAGACACAGGATTCTTTTATGCCATGGAAGTTGATAATGGTAATTTCAGGAGCATATTTTGGTCTGATGGCAGATCTAGATATTCATGCAGTCAGTTTGGTGATGTCATTGTTTTGGATTCATCATATCGGAAAGGAGTGTATTTGGTGCCATTTGCCACTTTTGTTGGAGTTAACCATCACAAGCAACCTGTACTTCTTGGATGTGCTCTGATTGCTGATGAATCTGAAGAGTCATTCACTTGGTTGTTTCAGACATGGCTGAGGGCAATGTCTGGCCGGCAGCCAGTATCAATAGTTGCTGATCAAGATGTTTCAATCCAGAGGGCAATAGCAAAAGTCTTTCCAGTAACCCATCATCGCTTTTCATTTTGGCAAATTAAGGCAAAAGAACAGGAGAATTTGGGTCCAATGGGCGAAGGGTTTATAAATTACTATGAAAAGTGTGTTTATCACAGTCAGACAGCTGATGAATTTGACACCACATGGAATGCCCTGCTTAATAAATATGGATTGAAGGACAATGCTTGGCTGCGGGAAATGTATGACAACCGTGCATCTTGGGTTCACTTATATCTAAGGAGCACATTTTTTGCTGGCATTCCCATGAATGAATGTGTTGAGTCATACTTTGGTACGCTTTTAAATGCCAATACACCTCTCATGGAGTTCATTCCACGGTATGAAAGAGGTCTTGAGCGATGCCGtgaggaagaaagaagaaaggactTTGATACTTCCAATTTGCAGCCTGTTTTGCAAACAAAGGAACCAGTAGAAGAACAATGTAGAAGGCTTTATACTCTTACCATATTCAAAGTATTTCAAAAAGAACTTCTGCAATGCTATAGTTATCTcgggtttaaaatttatgaagagGGGGGCCTCAGCAGATACTTGGTCCGTAGGTGTGGGACTGATATTGAGAGGCATGTGGTTACGTTTTCTGCCTCCAATCTTAGTGTGAGCTGTAGCTGTCGGATGTTTGAATACGAAGGTGTCCTTTGTAGGCATATCCTAAGGGTTTTCCAAATATTGGAATTAAGAGAAGTTCCAGCTCGCTACATCTTGCACCGATGGACAAGAAATGCCGAGGACGGTGTTTTTCCTGACATAGAATCATGGAGTAGCCCCCAAGAACTCAGGAATTTGATGCTATGGAGTCTCAGAGACACTGCATGTAAATATGTAGAGGCTGGTGCAACATCTCTTGAAAAGTACAAGCTTGCCTCTGAGATTTTGCTGGAGGGTGGGAGAAAACTATGTTGGCATAGGTA 2261 0.3954 MIKGNLLGVELAINNASGEGQMGSPHEPFIGLQFDSADEALEFYTSYAKRIGFKVRVGQLYRSRTDGSVSSRRYVCSKEGYQLSSRTGCPAFLRVQIRDSGKWVVDHFLKDHNHDLELEGEEFPPILPQKSLTALKSFTDATRKSKKKLLVAFKDDSSCPFGIYKRHRREGDEGQSTVVPYLGKEFSSVNEAYEFYHAYAVYAGFRIRIGQLFRSKNDGMIISRRFVCAKEGFQHPSRVGCAAYLRIKREPSGKWVIDRLQKDHNHTLDSEEEDRQNGFPASSILTEEVNSGLGNFNFNYTISKRSRENQINSVWYSLLSEYFQSRQAEDTGFFYAMEVDNGNFRSIFWSDGRSRYSCSQFGDVIVLDSSYRKGVYLVPFATFVGVNHHKQPVLLGCALIADESEESFTWLFQTWLRAMSGRQPVSIVADQDVSIQRAIAKVFPVTHHRFSFWQIKAKEQENLGPMGEGFINYYEKCVYHSQTADEFDTTWNALLNKYGLKDNAWLREMYDNRASWVHLYLRSTFFAGIPMNECVESYFGTLLNANTPLMEFIPRYERGLERCREEERRKDFDTSNLQPVLQTKEPVEEQCRRLYTLTIFKVFQKELLQCYSYLGFKIYEEGGLSRYLVRRCGTDIERHVVTFSASNLSVSCSCRMFEYEGVLCRHILRVFQILELREVPARYILHRWTRNAEDGVFPDIESWSSPQELRNLMLWSLRDTACKYVEAGATSLEKYKLASEILLEGGRKLCWHR 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01619 753 SMART 26again6 650 677 IPR006564 GO:0008270
Bva10g01619 753 ProSiteProfiles Zinc finger SWIM-type profile. 639 675 IPR007527 GO:0008270
Bva10g01619 753 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 22 118 IPR031052 GO:0006355
Bva10g01619 753 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 147 749 IPR031052 GO:0006355
Bva10g01619 753 Pfam SWIM zinc finger 649 672 IPR007527 GO:0008270
Bva10g01619 753 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 22 118 - -
Bva10g01619 753 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 147 749 - -
Bva10g01619 753 Pfam FAR1 DNA-binding domain 42 116 IPR004330 -
Bva10g01619 753 Pfam FAR1 DNA-binding domain 194 268 IPR004330 -
Bva10g01619 753 Pfam MULE transposase domain 364 457 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01619 Bva-Chr10 10883503 10886808 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Bva10g01619 MULE 8.7e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01619 - - gmx:100816656 1173.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01619 10 10883503 10886808 Bva10g01619 10 10883503 10886808 ECH