Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01592 atgagaaggacaaggaagagaagcagaaggacaaaagaaaagcagGACAAAGGAGAAAAGCTGAAAGACGATGGAGGAAATCATAAGGACAAAGGAGAAAAGCaggacaaagaagaaaagctgAAAGACGATGGAGGAAATCATAaggacaaagaagaaaatcagaTAGGTTTAGTAAGAAGCAGAAGAACAAGAGCAGGGTTACCTAATTCATTCTCAAGCATTGACTTGCGATCCTTAGACATTGATGGGGAAAGCGTAGCTGAATGCTCTCCTAGAGGTATACTAGAAGACTGCTCAAGTAGTTCAGAATTTGAAGCATCTTCTTCCAATGCCTGCACTTCAGACTTGGAGGATCAGCCAGATTCAAGAGACAATCCACATTCGCGTGGTTTATTTAAGATACTGAAAGGACCCCCAATGCGCctccaaaatttaaacattcGTGACTTTCGTCCACTTAGAAATGTTCCAATGCTCActagaagaagaagtaaaagaaTCAGGGAGGAGTTCATTCCAAATGCTCCACCGCTGCAACCAAGCTTTGACACTGATCAGTTGAGCTGCTTCAAATCTTCCTGGATAAATTTCACTCTTTCAGAGATTCAGGCTGCAACAAACGATTTCAGCCAAGaaaatttgattggGGAAGGAGGTTATGCTGAAGTTTACTTGGGAAAATTGGAAGATGGGAAATTCGTTGCAATTAAGCGGCTAACAAGAGGAAATCCAGAAGAAATGACTGCAGATTTCTTGTCTGAGCTTGGTATTATAGTGCACGTGGACCATCCCAATATTGCAAAATTGATTGGATATGGTGTTGAAGGGGGAATGTTCCTTGTTCTTCAATTGTCTCCACATGGCAGCCTATCATCCATACTTTATGGACCTCGAGAGAAACTGAACTGGAGCATCAGATATAAAATTGCTGAGGGTACTGCTGAGGGCCTTCACTATCTGCACGAGGGATGTCAAAGAAGAATTATTCACAGAGACATCAAGGCTGCTAATGTACTATTAATGGAGGATTTTGGGCCTCAGATCTCTGATTTTGGCCTTGCAAAGTGGTTACCTGACCAATGGACTCACCATACTGTCTCCAAAATTGAAGGCACATTCGGCTACCTTCCTCCTGAATTCTTCATGCATGGTATAGTAGATGAAAAAACCGATGTATATGCTTATGGAGTGTTATTGTTGGAGCTTATTTCTGGACGACAAGCCTTGGATAGCTCTCAGAAAAGTCTAGTGATGTGGGCGAAACCATTGATATCTCAAAATAAGATCAAAGAGCTAGTTGATTCTTGCCTTGCCGATGCTTATGATAAGGAAGAGATGGATCGTCTAATCATGACAGCTTTTGCTTGTGTAGACCCATCTGCAAGTCAACGACCAGTAATGAACCAGGTAACAAGGACTCTAAAAGGTGATGCAGAGTGCTTGAACCTCATGAAAGAACGCCAGAAGTCGACCAGATTACAGAGGACATTCTCTGAAGAACTCTATGATGCAGATGAGTATAACTCAACTAAGCTTTTGCAAAATCCAGATCAACTTATGGCGATTATCCTAAGCTCCTGCAACTCTTTCAATGATGAAAGCATTTA 1610 0.3857 MRRTRKRSRRTKEKQDKGEKLKDDGGNHKDKGEKQDKEEKLKDDGGNHKDKEENQIGLVRSRRTRAGLPNSFSSIDLRSLDIDGESVAECSPRGILEDCSSSSEFEASSSNACTSDLEDQPDSRDNPHSRGLFKILKGPPMRLQNLNIRDFRPLRNVPMLTRRRSKRIREEFIPNAPPLQPSFDTDQLSCFKSSWINFTLSEIQAATNDFSQENLIGEGGYAEVYLGKLEDGKFVAIKRLTRGNPEEMTADFLSELGIIVHVDHPNIAKLIGYGVEGGMFLVLQLSPHGSLSSILYGPREKLNWSIRYKIAEGTAEGLHYLHEGCQRRIIHRDIKAANVLLMEDFGPQISDFGLAKWLPDQWTHHTVSKIEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELISGRQALDSSQKSLVMWAKPLISQNKIKELVDSCLADAYDKEEMDRLIMTAFACVDPSASQRPVMNQVTRTLKGDAECLNLMKERQKSTRLQRTFSEELYDADEYNSTKLLQNPDQLMAIILSSCNSFNDESI 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01592 536 MobiDBLite consensus disorder prediction 1 62 - -
Bva10g01592 536 PANTHER OS08G0249100 PROTEIN 61 514 - -
Bva10g01592 536 Gene3D Phosphorylase Kinase; domain 1 179 284 - -
Bva10g01592 536 Pfam Protein tyrosine and serine/threonine kinase 213 475 IPR001245 GO:0004672|GO:0006468
Bva10g01592 536 Gene3D Transferase(Phosphotransferase) domain 1 287 502 - -
Bva10g01592 536 MobiDBLite consensus disorder prediction 110 132 - -
Bva10g01592 536 ProSitePatterns Serine/Threonine protein kinases active-site signature. 329 341 IPR008271 GO:0004672|GO:0006468
Bva10g01592 536 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 ISOFORM X1 61 514 - -
Bva10g01592 536 SMART serkin_6 210 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva10g01592 536 SUPERFAMILY Protein kinase-like (PK-like) 184 475 IPR011009 -
Bva10g01592 536 MobiDBLite consensus disorder prediction 12 59 - -
Bva10g01592 536 ProSiteProfiles Protein kinase domain profile. 210 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva10g01592 536 ProSitePatterns Protein kinases ATP-binding region signature. 216 238 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01592 Bva-Chr10 10772235 10775549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01592 202 476 Receptor kinase-like Gene Family AT4G02010 43.706 1.10e-69 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Bva10g01592 PK_Tyr_Ser-Thr 5.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01592 - - lja:Lj6g3v1915960.1 640.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01592 10 10772235 10775549 Bva10g01592 10 10772235 10775549 ECH
Bva10g01592 10 10772235 10775549 Bva13g03370 13 23147264 23151140 ECH
Bva10g01592 10 10772235 10775549 Bva13g02883 13 20872645 20875415 ECH