Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01581 ATGGAGGCTGAACCGCGTTTCGCAGAAGACCCTTCATCAGTTTGGGATTTGGAGTACCTTCTAGATTTCAACTTAGATGATCAATTGGGCGTCTCCTTAGACTACGATCAAAATTCAGAACTTCCTGAACCGTTGGAGCTTCCTCCACAAGAGGCTCCGACCGTAGAAAAGGTCCGCAAGCGAGACACGAGGCTGACCTGCTCCAATTTTCTTTCGGGTCGGGTCCCATGTGCATGCCCGGAACTCGATCAGAAGCTCGAGGAAGAAGGTTTACCTGGTAAGAAACGGCCTCGGACCATGCGTGCATCGGCTGGGATTGCACGGTGCCAGGTACCCGGGTGCGAGGCAGATATTAGTGAACTCAAAGGGTATCATAAGAGGCACAGGGTTTGTTTGCGGTGTGCAAATGCTAGTACGGTTATGATTGATGGGGAGGCGAAGAGATACTGTCAACAGTGTGGAAAGTTCCACATATTATTAGATTTTGATGAAGGTAAAAGAAGCTGTAGAAGAAAACTAGAGCGCCATAACAATCGAAGGCGAAGAAAGCCTGATGATTCCAAAGCTGTTGCAGAAAATGAACAATCTGTTTTGCAGACTGACGATGCCAAATTTGACGGTGAAGTAGGAAAAGATAGTTCATATTTGAGCAATGAGATGACTGAAAGAGGAGCATCACTGGAGCATGAAGATGGCCAAATTACTACCCAGTGCTCAGCTCCTGATACCCAGAATATCAATAGTGATAGTGGTTTATCTTTTGCTGCTTCTGTTGAAACACAAGTGCCTGGtggaaaagataattttaatttttctcattcaCCATCATATTGCGACAACAAGAGCGCTTACTCGTCTATGTGTCCTACAGGTCGGATCTCTTTTAAGCTTTATGATTGGAATCCAGCAGAGTTTCCCAGAAGGCTACGGCACCAAATATTCCAATGGTTGGCCAGTATGCCTGTTGAGCTGGAGGGATATATTCGTCCTGGATGCACAATCTTGACAGCTTTTATTGCAATGCCAAAATTTATGTGGATAAATTTACTTAAAGACCCTGTGACTTATGTGCGTGATCTTGTTGCTCCTGGAAAGATGCTATCTGGAAGAGGCAACATGCTAGTTCATCTGAATGATATGATCTTCCATGTCATGAAAGATGGATCTTCTGTGATGAAAGTTGAGTTAAAGGTGAAGGCACCAAGGCTTCACTATGTTCATCCCACATGCTTTGAAGCTGGCAAAGCTATGGAGTTTGTTGCATGTGGAAGTAACTTGCTGCAACCTAAGTTTCGGCTTCTTGTATCTTTTTCTGGGAAGTATCTGAAGTCTGAGTATTGTGTTGCATCTCCACATAACTCATCTGGAGATAACACTTCTTGTGCTTTTGAGCATCAGTTATACAAAATAAGTATCCCTCAAACTGAGCCAAATCTCTTTGGGCCTGCATATATTGAGGTGGAGAATGAGTCTGGTTTATCAAATGTTATTCCTGTACTCATTGGGGACAAAGAAATTTGCTTTGAAATTAAGGCATTGCAGCAGAAATTAGATGCATCTCTCTTTTCTAAACAACTCAAATCTGCATATGCTGGTTCGATCTGCAGCTCTTGCAAAGCATCTGTACTGAGACATACGGCATATTCTGACTTACTTTTAGATATAGCATGGTTGCTTAAGGATCCTACatcagaaaattttcatagagCTATGACGGCTTCGCAAGTTCAAAGATTCTGTTATTTGTTGGACTTTCTGATAGTCAATGATTCCACCATCGTTTTGCGGAAAATATTACAGAATTTGACAATATTGACAGAAATCATGGAGTCACATAACACATTTAATTGGGTGAGCAATGTTGACAAGTTGCCACTACAAAAATGCATTGATCATACTAGAGGGGTTCTTGATCAGAAACACCAGAAAGGTGGACGTTTACTGAAGGATTCTGTGTACTCTGAAGTGAAGCCATATACGATTCCTGAAAGCTACTTCCAACATAACACATCGTCTGTGACAATCAGCAGTCAGGGTGTTGAGGCAAGACCAGATGCTAAGTTGGGATTACTGAGAAGTCCAAACTGTAATGAAAGAAGTGAAAGGGTGCCGCTTTTAGAGAGGAAGATTGAAATGAATATGGACCCTTTAAAAGAATTTCCCAGAAAATCGTGTCATCCATATCTTGCCAGGGGAGTCCTGAACTCTCGGCCAGCTGTCTTTGTGATTGTTTCAGTTGCTTTGTGTGTTGGGGTATGCACAGCCCTCCTCCATCCTGGAATGGTTGGTGAATTTGCAGTATCGATCCGACAGTGCTTATTTAACCAATG 2330 0.421 MEAEPRFAEDPSSVWDLEYLLDFNLDDQLGVSLDYDQNSELPEPLELPPQEAPTVEKVRKRDTRLTCSNFLSGRVPCACPELDQKLEEEGLPGKKRPRTMRASAGIARCQVPGCEADISELKGYHKRHRVCLRCANASTVMIDGEAKRYCQQCGKFHILLDFDEGKRSCRRKLERHNNRRRRKPDDSKAVAENEQSVLQTDDAKFDGEVGKDSSYLSNEMTERGASLEHEDGQITTQCSAPDTQNINSDSGLSFAASVETQVPGGKDNFNFSHSPSYCDNKSAYSSMCPTGRISFKLYDWNPAEFPRRLRHQIFQWLASMPVELEGYIRPGCTILTAFIAMPKFMWINLLKDPVTYVRDLVAPGKMLSGRGNMLVHLNDMIFHVMKDGSSVMKVELKVKAPRLHYVHPTCFEAGKAMEFVACGSNLLQPKFRLLVSFSGKYLKSEYCVASPHNSSGDNTSCAFEHQLYKISIPQTEPNLFGPAYIEVENESGLSNVIPVLIGDKEICFEIKALQQKLDASLFSKQLKSAYAGSICSSCKASVLRHTAYSDLLLDIAWLLKDPTSENFHRAMTASQVQRFCYLLDFLIVNDSTIVLRKILQNLTILTEIMESHNTFNWVSNVDKLPLQKCIDHTRGVLDQKHQKGGRLLKDSVYSEVKPYTIPESYFQHNTSSVTISSQGVEARPDAKLGLLRSPNCNERSERVPLLERKIEMNMDPLKEFPRKSCHPYLARGVLNSRPAVFVIVSVALCVGVCTALLHPGMVGEFAVSIRQCLFNQ 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01581 776 ProSiteProfiles Zinc finger SBP-type profile. 106 183 IPR004333 GO:0003677
Bva10g01581 776 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 11 774 - -
Bva10g01581 776 SUPERFAMILY SBT domain 107 186 IPR036893 GO:0003677|GO:0005634
Bva10g01581 776 MobiDBLite consensus disorder prediction 175 215 - -
Bva10g01581 776 Pfam SBP domain 109 183 IPR004333 GO:0003677
Bva10g01581 776 Gene3D - 105 170 IPR036893 GO:0003677|GO:0005634
Bva10g01581 776 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 11 774 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01581 Bva-Chr10 10706531 10713101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01581 12 770 SBP-box Gene Family AT5G18830 48.601 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Bva10g01581 SBP 2.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01581 - - gmx:100776034 987.638
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01581 10 10706531 10713101 Bva10g01581 10 10706531 10713101 ECH