Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01580 ATGGCCAGATACCGAAGCCGGAGCAGGAGCTATAGCCCCCACCGGCGAAGCAGAACACCGCCGCGAGGACTTAAGCGGTACGATGATGAACCCCGCGAACGCTACCGTGACAGCAGGTCTTACCGAGATCGCCGTTCGCCTGCTCCTTCCGGTTTGCTCGTTCGAAATCTTCCCCTTCATGCTagGCCTGAAGATCTTAGGGTTCCATTTGAGCGCTATGGTGCTTTGAAGGATGTTTATCTTCCTAGGAATTACTACACTGGTCAGTCTAGAGGCTTTGGATTTGTGAAGTTCCGATATGCTGAAGATGCAGCTGAAGCAAAGCAACATCTTAATCATACTGTTATTGGTGGCCGTGAAATAACAATCGTGTTTGCGGACGAAAATAGGAAAACACCACAAGAAATGCGCAAGATTGCTCGTCTGAGtGATCGATATGGAGGAAGTGGTAGAAGGAGAACTCCTTCAAGATCTCCAAGACGCAGACATCGATctTACTCACGATCTCCTTCAGCAGCTGGGGATGACTCCAGGGATCGCAGGGATAGAGATGATTATCGTTCTCCTGAGAGATCCAGATCTTATTCTAGGTCTCCCTTTCCACGTGGTGAGAAGGATTACAGGAGGTCCCCAAGTCCAAGGGAGAATGGTCGAAGTCCCAATGACAAGAGGGACCGTACACCTAGCAGATCGGGGAGTCCTACGGGCAAAGGTCACGTTCCTTCAAGATCCCGTTCGCGGTCATACAGTCCTCGCTG 758 0.5053 MARYRSRSRSYSPHRRSRTPPRGLKRYDDEPRERYRDSRSYRDRRSPAPSGLLVRNLPLHARPEDLRVPFERYGALKDVYLPRNYYTGQSRGFGFVKFRYAEDAAEAKQHLNHTVIGGREITIVFADENRKTPQEMRKIARLSDRYGGSGRRRTPSRSPRRRHRSYSRSPSAAGDDSRDRRDRDDYRSPERSRSYSRSPFPRGEKDYRRSPSPRENGRSPNDKRDRTPSRSGSPTGKGHVPSRSRSRSYSPR 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01580 252 SUPERFAMILY RNA-binding domain, RBD 43 137 IPR035979 GO:0003676
Bva10g01580 252 SMART rrm1_1 51 124 IPR000504 GO:0003723
Bva10g01580 252 MobiDBLite consensus disorder prediction 22 44 - -
Bva10g01580 252 MobiDBLite consensus disorder prediction 132 151 - -
Bva10g01580 252 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 252 - -
Bva10g01580 252 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Bva10g01580 252 MobiDBLite consensus disorder prediction 132 252 - -
Bva10g01580 252 MobiDBLite consensus disorder prediction 231 252 - -
Bva10g01580 252 MobiDBLite consensus disorder prediction 173 230 - -
Bva10g01580 252 MobiDBLite consensus disorder prediction 1 51 - -
Bva10g01580 252 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 122 IPR000504 GO:0003723
Bva10g01580 252 Gene3D - 2 139 IPR012677 -
Bva10g01580 252 ProSitePatterns Protamine P1 signature. 2 12 IPR000221 GO:0000786|GO:0003677|GO:0005634|GO:0007283|GO:0035092
Bva10g01580 252 MobiDBLite consensus disorder prediction 1 21 - -
Bva10g01580 252 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL28 1 252 - -
Bva10g01580 252 SMART rrm2_1 51 124 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01580 Bva-Chr10 10699437 10704015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01580 42 117 Eukaryotic Initiation Factors Gene Family AT1G22760 34.615 1.02e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01580 K12900 - zju:107423311 255.373