Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva10g01577 | ATGCAAGCAGCTCAACCAATCAGTAATGAAGCATCTCATCATTCACATAAGATAATCAAAGAATTTCCAGATAACAGTTCCCATGGGAGGCGTCCGGATATTTCACTTCAAATTCCTCCTAGACCTTTAGGTTTTGGCAGCACTCGTGGTGGAAGGTTTGATAATTCTCCAAGTTTCTCCAAACGCATTCCATCACCAGGAGTGATCTGGCGAGCTTTGAGCTTCAAAAGGAAAGGTAATGCAGAACACGGTGAACGAAGCTCCCTTCTTAGTTCAGATCCTAAAACTGCTCCGGACAGTCCTAATATGGCTGATTCAACGTCTTCATTGGCATGGAAAAGATGTACTTCTCTTCCTGTTACACCGGCatcaaatctctctccttCGGTTCCCACACCTGCTTCTGCTAGGACATATAATGAAAGGCCTAAGTCACGTAAAGAGGGTCGTTCTAAGGTTTCAAGGTCCCTCTCTGTACCTGAGCGGAATGTTGTTATAGTAAGATCTTTGTCTCTTCCAACCCACAGTGAACATGCACAACAAGATCCAAATGACGATCAAATTATACCTGTGCCAGTAGAAGGCACTGATGAAGAAATCCCTGAAGAGGAAGCAGTGTGCAGAATATGTCTTGATGTTTGTGATGAAAAGAATACTCTTAAAATGGAATGCAGTTGCAAAGGTGCCCTGAGACTGGTGCATGAAGAATGTGCTATTAAATGGTTTAGcacaaaaggaaataagaagTGTGAAGTGTGTGGGTATGAGGTCCAAAATTTACCTGTAACTTTGCTTCGTGTGTCCAGCTCCGCTCAAAGGGAAAGCAGACAAATGCACGGTCAACAGAACTCACATTCAGAGACAATAAGTGCCTGGCAAGACTTTGTGGTGCTCGTGTTGATAAGCACgctatgttattttttcttcctcgAGCATCTACTGCTTCGTGACATGAAGACTCGAGCAATCATCATAGCAGCACCATTTGCCTTTACCTTGGGCCTCCTGGCATCTATTTTTGCAATCATTTTGGcgataaaagaatatatatggaCCTATGCTGCTCTTGAGTTTGCTCTTGTGGCTGTAACTGTGCACCTATTCTATACTATGTTGCATTTGAAGGCCATGTATGCAATATTACTCGCTTCAGTTTTTGGCTTTGGCATGTCTATGAGTATCAACTATGTGTATATCCAGTATGTTTCTTGGCGATTTCAAGTCTCCCAGGATACTAACCCAGTATG | 1247 | 0.4074 | MQAAQPISNEASHHSHKIIKEFPDNSSHGRRPDISLQIPPRPLGFGSTRGGRFDNSPSFSKRIPSPGVIWRALSFKRKGNAEHGERSSLLSSDPKTAPDSPNMADSTSSLAWKRCTSLPVTPASNLSPSVPTPASARTYNERPKSRKEGRSKVSRSLSVPERNVVIVRSLSLPTHSEHAQQDPNDDQIIPVPVEGTDEEIPEEEAVCRICLDVCDEKNTLKMECSCKGALRLVHEECAIKWFSTKGNKKCEVCGYEVQNLPVTLLRVSSSAQRESRQMHGQQNSHSETISAWQDFVVLVLISTLCYFFFLEHLLLRDMKTRAIIIAAPFAFTLGLLASIFAIILAIKEYIWTYAALEFALVAVTVHLFYTMLHLKAMYAILLASVFGFGMSMSINYVYIQYVSWRFQVSQDTNPV | 415 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva10g01577 | 415 | MobiDBLite | consensus disorder prediction | 121 | 157 | - | - | |
| Bva10g01577 | 415 | PANTHER | OS02G0165000 PROTEIN | 8 | 415 | - | - | |
| Bva10g01577 | 415 | MobiDBLite | consensus disorder prediction | 80 | 108 | - | - | |
| Bva10g01577 | 415 | MobiDBLite | consensus disorder prediction | 13 | 28 | - | - | |
| Bva10g01577 | 415 | SUPERFAMILY | RING/U-box | 203 | 257 | - | - | |
| Bva10g01577 | 415 | SMART | ringv_2 | 206 | 254 | IPR011016 | GO:0008270 | |
| Bva10g01577 | 415 | MobiDBLite | consensus disorder prediction | 85 | 108 | - | - | |
| Bva10g01577 | 415 | MobiDBLite | consensus disorder prediction | 121 | 139 | - | - | |
| Bva10g01577 | 415 | MobiDBLite | consensus disorder prediction | 140 | 155 | - | - | |
| Bva10g01577 | 415 | CDD | RING_CH-C4HC3_MARCH | 207 | 254 | - | - | |
| Bva10g01577 | 415 | Pfam | RING-variant domain | 207 | 253 | IPR011016 | GO:0008270 | |
| Bva10g01577 | 415 | PANTHER | ZINC FINGER PROTEIN | 8 | 415 | - | - | |
| Bva10g01577 | 415 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 193 | 262 | IPR013083 | - | |
| Bva10g01577 | 415 | MobiDBLite | consensus disorder prediction | 1 | 61 | - | - | |
| Bva10g01577 | 415 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 199 | 260 | IPR011016 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bva10g01577 | Bva-Chr10 | 10683269 | 10687467 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bva10g01577 | 220 | 314 | C3H Transcription Factor Family | AT5G59000 | 32.292 | 6.12e-11 | 60.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bva10g01577 | - | - | gmx:100777100 | 581.637 |