Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bva10g01564 | ATGCCGATGATTCGGAGCTTAATTCAGGATATGAGATCCAGGTCGCATCGCGTGGTCCAAGACGGCTCGATGGAGGTGGTAACCGATGGCATGAAGGAGAGTTGCTGGGCTAACATGCCGCAGGAGTTGCTCAGGGAGGTGCTGATGAGGATCGAGACATCGGAGAGCTCTTGGCCGACGCGGAAGAGTGTGGTAGCTTGCGCTGGAGTATGCCGGAGTTGGAGGGAGATCACCAAGGAGATCGTCAAGACTCTTGAAATTTCCACTAAGATAACGTTTCCAATCTCTGTCAAGCAGCCTGGTCCAAGGGAGCATCTCCTCCAGTGTTTTATAAAGCGCAACCGGTCTACCCAAACATATTCTTTGTATTTCAGTTTAACTAACGCATTAGCTGATGATGGGAAGTTCCTTTTGGCTGCACGCAAATGCAGACGTCCCACCTGCACAGATTATATAATCTCGCTAGATGCTGATGATATGTCAAAGGGAAGCAATACTTATGTTGGGAAACTGAGATCAAATTTTCTGGGAACAAAGTTCACAGTATATGATGGCCAGCCACCTCATGCTGGGGCAAAGATCACTAAAAGTCGCTCCACTAGGCTGGTGAACCTAAAACAAGTTTCACCCAGGTTGCCTACTGGTAACTATCCAGTGGCACATATCTCATATGAATTAAATGTTCTTGGCTCCAGGGGGCCTCGGAGAATGTACTGTGTCATGGATGCCATTCCCGCCTCAGCAATAGAACCAGGAGGGGTAGCCCCTACACAGACTGAGTTTTCTTTTAGCAACATTGATATGTTTCCTTCATTCCTATTTTTCCGGTCAAAATCAAATCGTGTGGAAAACTCCCTTTCTGGATTTCTGGGAGATCAAAAAGATGGCATGTTAGTGTTGAAAAACAAGGCTCCCAGATGGCATGAGCAACTCCAATGTTGGTGCTTAAATTTTCATGGACGAGTGACTGTTGCTTCAGTTAAAAACTTTCAGCTGGTGGCTTCACCACCAGAAAATGGACCTGGTGGACCAGAACATGAGAAGATTATCCTTCAGTTTGGAAAAGTTGGAAAGGATTTGTTTACAATGGACTACCGTTATCCCATCTCAGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGATACGAAGATTGCTTGTGAGTG | 1169 | 0.4619 | MPMIRSLIQDMRSRSHRVVQDGSMEVVTDGMKESCWANMPQELLREVLMRIETSESSWPTRKSVVACAGVCRSWREITKEIVKTLEISTKITFPISVKQPGPREHLLQCFIKRNRSTQTYSLYFSLTNALADDGKFLLAARKCRRPTCTDYIISLDADDMSKGSNTYVGKLRSNFLGTKFTVYDGQPPHAGAKITKSRSTRLVNLKQVSPRLPTGNYPVAHISYELNVLGSRGPRRMYCVMDAIPASAIEPGGVAPTQTEFSFSNIDMFPSFLFFRSKSNRVENSLSGFLGDQKDGMLVLKNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPPENGPGGPEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE | 389 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bva10g01564 | 389 | SUPERFAMILY | F-box domain | 23 | 79 | IPR036047 | GO:0005515 | |
Bva10g01564 | 389 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 9 | 4 | 389 | - | - | |
Bva10g01564 | 389 | Pfam | Tub family | 97 | 384 | IPR000007 | - | |
Bva10g01564 | 389 | ProSitePatterns | Tub family signature 2. | 374 | 389 | IPR018066 | - | |
Bva10g01564 | 389 | PANTHER | TUBBY-RELATED | 4 | 389 | - | - | |
Bva10g01564 | 389 | PRINTS | Tubby superfamily signature | 367 | 389 | IPR000007 | - | |
Bva10g01564 | 389 | PRINTS | Tubby superfamily signature | 167 | 191 | IPR000007 | - | |
Bva10g01564 | 389 | PRINTS | Tubby superfamily signature | 346 | 365 | IPR000007 | - | |
Bva10g01564 | 389 | PRINTS | Tubby superfamily signature | 300 | 317 | IPR000007 | - | |
Bva10g01564 | 389 | PRINTS | Tubby superfamily signature | 216 | 243 | IPR000007 | - | |
Bva10g01564 | 389 | PRINTS | Tubby superfamily signature | 318 | 334 | IPR000007 | - | |
Bva10g01564 | 389 | PRINTS | Tubby superfamily signature | 151 | 167 | IPR000007 | - | |
Bva10g01564 | 389 | Gene3D | Tubby Protein; Chain A | 92 | 389 | IPR025659 | - | |
Bva10g01564 | 389 | SUPERFAMILY | Tubby C-terminal domain-like | 87 | 389 | IPR025659 | - | |
Bva10g01564 | 389 | ProSitePatterns | Tub family signature 1. | 318 | 331 | IPR018066 | - | |
Bva10g01564 | 389 | Pfam | F-box domain | 36 | 83 | IPR001810 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Bva10g01564 | Bva-Chr10 | 10583668 | 10587611 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Bva10g01564 | 4 | 389 | TUB Transcription Factor Family | AT2G47900 | 72.059 | 0.0 | 580 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | TUB | Bva10g01564 | Tub | 3.8e-112 | CL0395 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bva10g01564 | K19600 | - | gmx:100815464 | 671.774 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Bva10g01564 | 10 | 10583668 | 10587611 | Bva10g01564 | 10 | 10583668 | 10587611 | ECH |