Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01564 ATGCCGATGATTCGGAGCTTAATTCAGGATATGAGATCCAGGTCGCATCGCGTGGTCCAAGACGGCTCGATGGAGGTGGTAACCGATGGCATGAAGGAGAGTTGCTGGGCTAACATGCCGCAGGAGTTGCTCAGGGAGGTGCTGATGAGGATCGAGACATCGGAGAGCTCTTGGCCGACGCGGAAGAGTGTGGTAGCTTGCGCTGGAGTATGCCGGAGTTGGAGGGAGATCACCAAGGAGATCGTCAAGACTCTTGAAATTTCCACTAAGATAACGTTTCCAATCTCTGTCAAGCAGCCTGGTCCAAGGGAGCATCTCCTCCAGTGTTTTATAAAGCGCAACCGGTCTACCCAAACATATTCTTTGTATTTCAGTTTAACTAACGCATTAGCTGATGATGGGAAGTTCCTTTTGGCTGCACGCAAATGCAGACGTCCCACCTGCACAGATTATATAATCTCGCTAGATGCTGATGATATGTCAAAGGGAAGCAATACTTATGTTGGGAAACTGAGATCAAATTTTCTGGGAACAAAGTTCACAGTATATGATGGCCAGCCACCTCATGCTGGGGCAAAGATCACTAAAAGTCGCTCCACTAGGCTGGTGAACCTAAAACAAGTTTCACCCAGGTTGCCTACTGGTAACTATCCAGTGGCACATATCTCATATGAATTAAATGTTCTTGGCTCCAGGGGGCCTCGGAGAATGTACTGTGTCATGGATGCCATTCCCGCCTCAGCAATAGAACCAGGAGGGGTAGCCCCTACACAGACTGAGTTTTCTTTTAGCAACATTGATATGTTTCCTTCATTCCTATTTTTCCGGTCAAAATCAAATCGTGTGGAAAACTCCCTTTCTGGATTTCTGGGAGATCAAAAAGATGGCATGTTAGTGTTGAAAAACAAGGCTCCCAGATGGCATGAGCAACTCCAATGTTGGTGCTTAAATTTTCATGGACGAGTGACTGTTGCTTCAGTTAAAAACTTTCAGCTGGTGGCTTCACCACCAGAAAATGGACCTGGTGGACCAGAACATGAGAAGATTATCCTTCAGTTTGGAAAAGTTGGAAAGGATTTGTTTACAATGGACTACCGTTATCCCATCTCAGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGATACGAAGATTGCTTGTGAGTG 1169 0.4619 MPMIRSLIQDMRSRSHRVVQDGSMEVVTDGMKESCWANMPQELLREVLMRIETSESSWPTRKSVVACAGVCRSWREITKEIVKTLEISTKITFPISVKQPGPREHLLQCFIKRNRSTQTYSLYFSLTNALADDGKFLLAARKCRRPTCTDYIISLDADDMSKGSNTYVGKLRSNFLGTKFTVYDGQPPHAGAKITKSRSTRLVNLKQVSPRLPTGNYPVAHISYELNVLGSRGPRRMYCVMDAIPASAIEPGGVAPTQTEFSFSNIDMFPSFLFFRSKSNRVENSLSGFLGDQKDGMLVLKNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPPENGPGGPEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01564 389 SUPERFAMILY F-box domain 23 79 IPR036047 GO:0005515
Bva10g01564 389 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 4 389 - -
Bva10g01564 389 Pfam Tub family 97 384 IPR000007 -
Bva10g01564 389 ProSitePatterns Tub family signature 2. 374 389 IPR018066 -
Bva10g01564 389 PANTHER TUBBY-RELATED 4 389 - -
Bva10g01564 389 PRINTS Tubby superfamily signature 367 389 IPR000007 -
Bva10g01564 389 PRINTS Tubby superfamily signature 167 191 IPR000007 -
Bva10g01564 389 PRINTS Tubby superfamily signature 346 365 IPR000007 -
Bva10g01564 389 PRINTS Tubby superfamily signature 300 317 IPR000007 -
Bva10g01564 389 PRINTS Tubby superfamily signature 216 243 IPR000007 -
Bva10g01564 389 PRINTS Tubby superfamily signature 318 334 IPR000007 -
Bva10g01564 389 PRINTS Tubby superfamily signature 151 167 IPR000007 -
Bva10g01564 389 Gene3D Tubby Protein; Chain A 92 389 IPR025659 -
Bva10g01564 389 SUPERFAMILY Tubby C-terminal domain-like 87 389 IPR025659 -
Bva10g01564 389 ProSitePatterns Tub family signature 1. 318 331 IPR018066 -
Bva10g01564 389 Pfam F-box domain 36 83 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01564 Bva-Chr10 10583668 10587611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01564 4 389 TUB Transcription Factor Family AT2G47900 72.059 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Bva10g01564 Tub 3.8e-112 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01564 K19600 - gmx:100815464 671.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01564 10 10583668 10587611 Bva10g01564 10 10583668 10587611 ECH