Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bva10g01547 | ATGGCGAGGCCCTCCAAGACCCAGGTCTCCTCCGACGAAGCTCTTTCCAACGCCTCAAATTCTTCGGAGGAGGAGCAGGTCAACGACCAGATAAATGACGAAGAGGACGAGGAGGAGTTGGAAGCAGTGGCTCGCTCTGCTGGCACTGACGACGATGAAGCCGCGGATGATAATCCACAGGACTCCGACGAAGATGCTGCCGCTGCTGGAGAAGGCGACGAGGAAGAACAGGATGAAGGTAACGTTGGTCCAGAAATTAGCAAGCGTGAAAAGGCTAGATTAAAAGAGAtgcagaaaatgaagaaacaaaagattcAGGAGATATTGGATCAACAAAATGCTGCCATTGATGCTGATATGAATAATAGAGGAAAGGGTCGCTTGAAATATCTCTTGCAGCAAACTGAGCTGTTTGCTCATTTTGCAAAAGGTGATCCGTCTTCATCTCAGAAGAAATCAAGGGGAAGGGGTCGCCATGCATCAAGAGTAactgaagaagaggaagatgaagaatatcttaaagaggaagaagatggtTTGTCAAACACACGGCTGGTGACCCAACCATCATGCATCCAAGGGAAATTGAGGGATTACCAACTTGCTGGACTAAATTGGCTTATACGATTATATGAGAATGGTATAAATGGGATTCTAGCAGATGAAATGGGCCTTGGTAAAACATTGCAAACTATCTCCTTGTTGGGCTATTTACATGAATTTAGAGGAATTAAAGGCCCACATATGGTAGTTGCTCCAAAATCTACCCTTGGAAATTGGATGAATGAAATTAGGCGCTTTTGTCCTGTTTTGCGTGCGGTAAAGTTCCTTGGCAATCCTGATGAAAGGAGGCATATAAGAGAGGAATTATTGGTTGCTGGGAAGTTTGATGTATGTGTTACCAGTTTTGAAATGGCAATCAAGGAGAAGTCTGCCTTGCGTCGTTTTAGTTGGCGCTACATAATCATTGATGAAGCCCATCGAATCAAGAATGAGAATTCCCTACTTTCCAAAACAATGAGGCTTTACAATACTAATTATCGCCTCCTTATCACTGGTACACCACTTCAGAACAATCTTCATGAACTCTGGTCCCTTCTGAACTTTCTGCTTCCTGAAATTTTTAGTTCTGCTGAAACTTTTGATGAGTGGTTTCAAATCTCTGGCGAAAATGACCAGCAGGAGGTTGTGCAACAGTTACATAAGGTCCTTCGGCCATTTCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGCTTACCTCCTAAGAAGGAAACCATCCTCAAAGTAGGGATGTCACAAATGCAGAAGCATTATTATAGGGCATTATTGCAGAAGGATCTTGAGGTTGTTAATGCTGGTGGCGAAAGGAAGCGTCTCCTAAATATAGCAATGCAACTACGTAAATGTTGTAATCATCCTTATCTTTTCCAAGGTGCTGAACCTGGTCCTCCTTATACCACAGGAGACCATCTCATTACAAATGCTGGTAAAATGGTTCTTTTGGATAAGTTACTTCCTAAACTAAAAGAACGTGATTCTAGAGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAgattatttgatgttttgtGGATATCAATACTGTCGCATTGATGGTAATACTGGTGGAGAAGATCGAGATGCTTCCATTGATGCTTTCAACAAACCTGGAAGTGAGAAATTTGTCTTCTTGTTATCAACCCGGGCTGGAGGTCTTGGCATTAATCTTGCTACTGCAGATGTTGTCATTCTTTATGATAGTGACTGGAATCCTCAAGTTGACTTGCAGGCTCAGGATCGTGCACATAGGATTggtcaaaagaaagaagttcaAGTTTTCCGATTTTGCACGGAGTACACAATTGAGGAAAAAGTCATTGAAAGGGCCTACAAGAAACTTGCACTTGATGCACTTGTGATTCAGCAAGGACGATTGGCAGAGCAGAAGACTGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGTGCTGAAATGGTTTTCAGTTCCAAGGATAGTACAATCACAGATGAGGATATTGATCGAATTATtgcaaaaggagaagaagcaaCAGCTGAGCTTGATGCCaagatgaaaaaatttacTGAAGATGCAATCAAATTTAAGATGGATGACACTGCTGAATTGtatgattttgatgatgataagGATGAGaacaaatttgatttcaaGAAAATAGTAAGTGATAACTGGATCGAGCCCCCAAAAAGAGAGCGGAAGCGCAACTACTCAGAGTCTGAGTACTTTAAGCAAACAATGCGCCAAGGTGGTCCAACCAAACCAAAAGAGCCCCGTATTCCTAGGATGCCCCAGTTGCATGATTTCCAGTTTTTCAACACTCAAAGGCTGAGTGAATTGTATGAAAAAGAAGTTCGCTATCTCATGCAAACTCATCAGAAGAATCAGCTAAAGGACTCCATAGAGGTTGATGAACCTGAAGAGGTGGGAGAACCATTGACTGCTGAAGAGCTGGAAGAAAAGGAACGCCTGCTAGAGGAGGGATTTTCTTCATGGAGCCGGAGGGATTTTAACACCTTTATTAGGGCCTGTGAAAAGTATGGCCGTAATGATATAAAAAGCATAGCCTCTGAGATGGAAGGAAAAACTGAGGAGGAAGTTGAAAGATATGCAAAGTTCTTTAAAGAAAGATACAAGGAGTTAAATGATTATGAtagaatcattaaaaatattgaaagagGAGAGGCTAGAATTTCTAGGAAAGATGAGATCATGAAAGCTGTTGGGAAGAAGTTGGACCGCTACAAGAATCCATGGCTAGAGTTGAAGATACAGTATGGGCAAAACAAAGGGAAGTTGTACAATGAAGAGTGCGATCGATTCAtgATATGCATGGTTCACAAACTTGGTTACGGGAATTGGGATGAGTTAAAGGCGGCATTTCGCACATCACCCTTGTTTCGTTTTGATTGGTTTGTAAAGTCTCGCACAACACAGGAGCTTGCAAGGAGGTGCGATACCCTTATTCGGTTGGTAGAGAAGGAAAACCAAGAATATGATGAGAGAGAAAGGCAGGCCCGGAAAGAGAAGAAGCTTGCCAAGAGCATGACCCCCTCAAAGCGTGCCTTGGCAAGACAGACAGACAGTCCGTCTTCTCTGAAGAAGCGCAAGCAGTCAACTATGGATGACTATGTCAGCACGGGCAAGAGGAGAAAATA | 3215 | 0.4028 | MARPSKTQVSSDEALSNASNSSEEEQVNDQINDEEDEEELEAVARSAGTDDDEAADDNPQDSDEDAAAAGEGDEEEQDEGNVGPEISKREKARLKEMQKMKKQKIQEILDQQNAAIDADMNNRGKGRLKYLLQQTELFAHFAKGDPSSSQKKSRGRGRHASRVTEEEEDEEYLKEEEDGLSNTRLVTQPSCIQGKLRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPDERRHIREELLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKHYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFCGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDDKDENKFDFKKIVSDNWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDSIEVDEPEEVGEPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKFFKERYKELNDYDRIIKNIERGEARISRKDEIMKAVGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKSMTPSKRALARQTDSPSSLKKRKQSTMDDYVSTGKRRK | 1071 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bva10g01547 | 1071 | CDD | SANT | 850 | 894 | IPR001005 | - | |
Bva10g01547 | 1071 | PANTHER | SNF2/RAD54 HELICASE FAMILY | 9 | 1071 | - | - | |
Bva10g01547 | 1071 | SMART | helicmild6 | 527 | 611 | IPR001650 | - | |
Bva10g01547 | 1071 | Gene3D | - | 417 | 709 | IPR027417 | - | |
Bva10g01547 | 1071 | Coils | Coil | 87 | 114 | - | - | |
Bva10g01547 | 1071 | ProSiteProfiles | SANT domain profile. | 846 | 898 | IPR017884 | - | |
Bva10g01547 | 1071 | SUPERFAMILY | Homeodomain-like | 850 | 900 | IPR009057 | - | |
Bva10g01547 | 1071 | SMART | sant | 847 | 896 | IPR001005 | - | |
Bva10g01547 | 1071 | SMART | sant | 949 | 1010 | IPR001005 | - | |
Bva10g01547 | 1071 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Bva10g01547 | 1071 | Gene3D | - | 847 | 901 | - | - | |
Bva10g01547 | 1071 | MobiDBLite | consensus disorder prediction | 1019 | 1035 | - | - | |
Bva10g01547 | 1071 | MobiDBLite | consensus disorder prediction | 142 | 178 | - | - | |
Bva10g01547 | 1071 | Coils | Coil | 1004 | 1031 | - | - | |
Bva10g01547 | 1071 | Gene3D | - | 935 | 1038 | - | - | |
Bva10g01547 | 1071 | MobiDBLite | consensus disorder prediction | 1 | 99 | - | - | |
Bva10g01547 | 1071 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 172 | 411 | IPR027417 | - | |
Bva10g01547 | 1071 | Gene3D | - | 197 | 412 | IPR038718 | - | |
Bva10g01547 | 1071 | Pfam | Helicase conserved C-terminal domain | 499 | 611 | IPR001650 | - | |
Bva10g01547 | 1071 | CDD | SF2_C_SNF | 497 | 622 | - | - | |
Bva10g01547 | 1071 | Pfam | SNF2-related domain | 209 | 476 | IPR000330 | GO:0005524|GO:0140658 | |
Bva10g01547 | 1071 | Pfam | HAND | 760 | 844 | IPR015194 | GO:0003677|GO:0006338|GO:0031491 | |
Bva10g01547 | 1071 | Gene3D | ISWI, HAND domain | 748 | 846 | IPR036306 | GO:0003677|GO:0006338|GO:0031491 | |
Bva10g01547 | 1071 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 501 | 652 | IPR001650 | - | |
Bva10g01547 | 1071 | MobiDBLite | consensus disorder prediction | 53 | 80 | - | - | |
Bva10g01547 | 1071 | MobiDBLite | consensus disorder prediction | 1049 | 1071 | - | - | |
Bva10g01547 | 1071 | Gene3D | iswi atpase | 902 | 934 | - | - | |
Bva10g01547 | 1071 | MobiDBLite | consensus disorder prediction | 81 | 99 | - | - | |
Bva10g01547 | 1071 | CDD | DEXHc_SMARCA1_SMARCA5 | 193 | 413 | IPR044754 | GO:0005524 | |
Bva10g01547 | 1071 | MobiDBLite | consensus disorder prediction | 27 | 41 | - | - | |
Bva10g01547 | 1071 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 208 | 373 | IPR014001 | - | |
Bva10g01547 | 1071 | SUPERFAMILY | Homeodomain-like | 902 | 1024 | IPR009057 | - | |
Bva10g01547 | 1071 | Pfam | SLIDE | 904 | 1014 | IPR015195 | GO:0003677|GO:0005634|GO:0006338 | |
Bva10g01547 | 1071 | SMART | ultradead3 | 192 | 384 | IPR014001 | - | |
Bva10g01547 | 1071 | MobiDBLite | consensus disorder prediction | 1019 | 1071 | - | - | |
Bva10g01547 | 1071 | PANTHER | REMODELING FACTOR, PUTATIVE-RELATED | 9 | 1071 | - | - | |
Bva10g01547 | 1071 | SUPERFAMILY | HAND domain of the nucleosome remodeling ATPase ISWI | 759 | 849 | IPR036306 | GO:0003677|GO:0006338|GO:0031491 | |
Bva10g01547 | 1071 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 413 | 694 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Bva10g01547 | Bva-Chr10 | 10518415 | 10526093 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Bva10g01547 | 188 | 638 | RAD5 or RAD16-like Gene Family | AT1G02670 | 26.916 | 1.19e-41 | 161 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SNF2 | Bva10g01547 | SNF2_N | 2.5e-72 | CL0023 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bva10g01547 | K11654 | - | gmx:100782649 | 1887.85 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Bva10g01547 | 10 | 10518415 | 10526093 | Bva10g01547 | 10 | 10518415 | 10526093 | ECH |