Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01538 ATGTCCAACTCTAGGAACCCAGAAAAACCCTTCAGAGTGTTTGAACCCAGTCAAACCCAGATGGGTTTGTCTCTTGTTCAGCGTAACACATCTCCTTCTGGggagagaagaggaagaagaaagcaagcTGAGCCAGGGAGGTTTCTTGGAGTTAGAAGGCGCCCTTGGGGTAGATATGCTGCTGAAATCAGAGACCCCACAACTAAAGAAAGGCACTGGCTTGGCACATTTGACACTGCTCAAGAAGCAGCTCTTGCCTATGACAGAGCTGCTCTGTCCATGAAAGGTAGCCAAGCAAGAACCAACTTTGTTTACGCTGACAACACCACTTTCCACACTCTTCTTACTCCTATGGATGTTCAAGTTCTCTTGCCAGTATCTCAGTTCTTCGCTAACACCCAGAACAAGCCACTAACCAATCAGAGTAACCCTACTCAGCTTGATTCTTCCTTCATCGAGAACCCTGCCCAATTGAAAAATGACAGTTCTGCTGAAACTGCATATGGGTCAGCAGCTCAGGACGATGATAACTTATTCTCCAATGATACTAACTCGGGTTACTTGGAATGTATAGTTTCTGGTAACTCTTTAAGATCTTCCAGCTCCAACAGTTCCAACTCCAGAAAGAGCAATGCGAGTGCTTCAATGGAGCAAATGGTTAGCTCCATCAACACAAACTCCATGGAGTGTCAATCACATTTTAACAAGGGTGCAATTTCTCAAGATTCCACGAATATGTTTGGAGATTTTCCTTATCCAAATGAACTGAGTCAAGGATTCTGGGATAACCAGCAGCAGTCATTGGATAGAAGTTGCAGTGATCTTTCTGCTATAATCAATAATAACCCATTAAGGGTGGAAGATGAATGCATGGGCGCTTTATGTCCCTTCAATGACAGTCCAAGCTATGGCCTAACGACTCAAGCAGCTTCCTCAACAACCTGCTCCCCATCACTTCCTCCTTTTGGAGATGTTGACTTGGGGTATTCACTCTTCTG 998 0.4349 MSNSRNPEKPFRVFEPSQTQMGLSLVQRNTSPSGERRGRRKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGSQARTNFVYADNTTFHTLLTPMDVQVLLPVSQFFANTQNKPLTNQSNPTQLDSSFIENPAQLKNDSSAETAYGSAAQDDDNLFSNDTNSGYLECIVSGNSLRSSSSNSSNSRKSNASASMEQMVSSINTNSMECQSHFNKGAISQDSTNMFGDFPYPNELSQGFWDNQQQSLDRSCSDLSAIINNNPLRVEDECMGALCPFNDSPSYGLTTQAASSTTCSPSLPPFGDVDLGYSLF 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01538 332 Pfam AP2 domain 50 96 IPR001471 GO:0003700|GO:0006355
Bva10g01538 332 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Bva10g01538 332 MobiDBLite consensus disorder prediction 1 46 - -
Bva10g01538 332 SUPERFAMILY DNA-binding domain 48 104 IPR016177 GO:0003677
Bva10g01538 332 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Bva10g01538 332 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 332 - -
Bva10g01538 332 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Bva10g01538 332 MobiDBLite consensus disorder prediction 17 32 - -
Bva10g01538 332 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Bva10g01538 332 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Bva10g01538 332 MobiDBLite consensus disorder prediction 196 218 - -
Bva10g01538 332 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Bva10g01538 332 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01538 Bva-Chr10 10459997 10460995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01538 12 213 AP2-EREBP Transcription Factor Family AT5G18560 44.841 9.44e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Bva10g01538 AP2 1.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01538 - - gmx:100812047 375.17