Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01483 ATGGTTGAACCTCCGCGGCCGAAGGAAAACCCCGATACTATTCCATATGACGGCAAGAGCTATGCCCTCAGCGGCAAGATTATGCTAAGCGCGattgttattttgttcttcGTCGTCCTTATAATGGTCTGCCTTCACCTGTATGCGCGATGGTATCTTTTGCGCTCTCGCCGCCGCCATGCCCGCCGTAACCGAAACTACCGCCGTGCTCAGCTTGTATTCTACGTCGATCCCGCCGACACCGGGTCGGCGATCGTTGCCTCCCGCGGTCTTGAGGATTCTGTAATTAAGTCTCTCCCTGTTTTTACATACTCCTCCAAGACCCACCCGGAACCCGTGGAATGCGCCGTTTGCTTGTCGGAATTTGAAGATGGCGAGTCGGGTCGGGTTTTGCCCTGTAACCATGGCTTTCATATTGACTGTATCGATATGTGGTTTCATTCACACTCCACATGCCCGCTTTGCAGAACTCCCGTAGAAGCTCCTGCGGCAATGGACAATACCGGATCCGAGGTGGCTATCACTGTATGTGAACCGGGTTCAAGTTCTGGGTTGTGTGCGGAGTGTGAAAACGAACCCGAGGAAAGAAACCGAACTGGTTCGAGACTTTCTTCGCCTTCTTCCTCGGTCGGGCTCAGGCGGAAGCCGTCGCTGGCGGGTATCACAATTGAATTGCCCGGCCCGGGAAGGAACGAGAGCTTTGACGAGGCAAATTGCAACTCGCCGGCGACTCAGTCGTCGTTTCGGTCACCGATGAGTCGTATGCGGTCGTTTAAGAGAATACTAAGCAGAGATAGGAAAACATGCCTTTCTCCTACTTCAGCTGTGGGTTGTAGCTCCACCACCCCCACCGCCGACTTAGAAATGGACCGGGGAGGGCGAGACGCGACTCAGTG 896 0.5368 MVEPPRPKENPDTIPYDGKSYALSGKIMLSAIVILFFVVLIMVCLHLYARWYLLRSRRRHARRNRNYRRAQLVFYVDPADTGSAIVASRGLEDSVIKSLPVFTYSSKTHPEPVECAVCLSEFEDGESGRVLPCNHGFHIDCIDMWFHSHSTCPLCRTPVEAPAAMDNTGSEVAITVCEPGSSSGLCAECENEPEERNRTGSRLSSPSSSVGLRRKPSLAGITIELPGPGRNESFDEANCNSPATQSSFRSPMSRMRSFKRILSRDRKTCLSPTSAVGCSSTTPTADLEMDRGGRDATQ 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01483 298 MobiDBLite consensus disorder prediction 188 254 - -
Bva10g01483 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 162 IPR013083 -
Bva10g01483 298 SMART ring_2 115 155 IPR001841 -
Bva10g01483 298 CDD RING-H2_PA-TM-RING 114 156 - -
Bva10g01483 298 MobiDBLite consensus disorder prediction 272 286 - -
Bva10g01483 298 MobiDBLite consensus disorder prediction 234 253 - -
Bva10g01483 298 ProSiteProfiles Zinc finger RING-type profile. 115 156 IPR001841 -
Bva10g01483 298 PANTHER RING-H2 FINGER PROTEIN ATL64 19 229 - -
Bva10g01483 298 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 19 229 - -
Bva10g01483 298 MobiDBLite consensus disorder prediction 272 298 - -
Bva10g01483 298 Pfam Ring finger domain 114 156 IPR001841 -
Bva10g01483 298 SUPERFAMILY RING/U-box 95 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01483 Bva-Chr10 10168171 10169435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01483 4 296 Rapid Response to Elicitors AT3G16720 52.396 6.58e-82 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01483 - - cpap:110815123 277.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01483 10 10168171 10169435 Bva10g01483 10 10168171 10169435 ECH