Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01476 ATGTTAGCCGCCGTGGCCCACggcgaagaagaagaacacgGCATGTTCGAGGAAATTGGCCAGATTGCATCATCTCAAAAGTTTACCAACGTAGACATGGTTTGCCGGTCAACGGAATTCCAAAACACATGCAAGGAAAGCCTTGCAAATGCCGGAAACGGAAGCACGGACATGAAGGACTTGTTCAAAGCAGGCCTCAACGCCGCCATGGAGGAGATGAAGAAGCAGATCCACAACTCCACCCTTTTCAAAGAGCTTTCCACAGACGACAGCACCAAACAGGCCTTGGATGTGTGCAAGGAAGTGCTGGGTTTCGCCGTTGACAGTCTCCACGCATCAATACACAAGTTGGGCAGGTTTGATATCCACAAGCTCCAAGATTACTCCTACGATCTCAAGATTTGGCTCAGTGCAACACTGACCCACCAGCAGACATGTTTGGACGCGTTTGAGGACACAACCACCAATGCAGGGAAGGAGATGACCAGGGTTTTAAACAGCTCCATGGAGCTCAGCAGCAATGCCTTGGACATGGTTACTGGGTTCTCTGATTTGCTTAAAAACTTCAAGTTTGGTTCAGGCAATAGAAAGCTAATGTCGGCTTCAGAGGAAGCAACAATGGATGATGGTTTCCATTCATGGGTCAGCGAAGGGCATAGACGGCTCCTTCAGGTTGCTCCAGAAGGGATTAAACCTAATGTGGTTGTGGCTCAAGATGGAAGTGGGGACTACAAAACCCTAACTGATGCCCTGAAAACTATTCCCAAGAAAAATAGAACCCCATTTGTGATCTACGTGAAAGCTGGCATATACAAGGAGTACGTGAACGTAATGAAGCACATGACGTACGTGACCATCATCGGAGACGGTCCCACCCAGACCCGGTTCACCGGAAACAAGAACTATCTAGATGGTGTCAAGACTTACTTCACAGCAACATTTGGGGTCAACGCCGTTTACTTCACCGCCAAGAATGTCGGGTTCGAGAACACCGCAGGATCGTTGAAACACCAAGCCGTGGCACTCCGTGTAACCTCAGACAAGGCCGTGTTCTACAACTGCTTCATTGACGGTTACCAAGACAGCCTCTACGTTCAATCCCAGAGGCAATTCTACCGGGACTGCTCCATCAGCGGCACCATCGACTTCGTGTTCGGCGATGCCGCCGTGGTTTTCCAGAACTGCAAGCTCATCGTGAGGAAACCACAGGACAACCAGAACTGCATCGTCGCAGCCGGAGGAAGGATGAAGCCTGATGACCCTAATGGACTTATTTTCCAGAGCTGCCACTTCACTGCAGAGCCAGATTACTTGCCTTGGAAGGCAACCAGTGGCAGAACCTCGTATTTGGCAAGACCATGGAAGCCGTACGCCAAGACTGTGATCGTTGATTCAACGATCGATGGGATTTTTGATCCAAAGGGTTATCTTGATTGGGAGGGCACAGTTCATCATCAGACTTGCAGTGCTTTTGAGTTTAACAACAAAGGACCTGGTGCTGATACCAGCCAGAGGGTGAAGTGGCCAGGTGTGAAGGTATTGTCTGGACCCGAAGCTGCCACCTACTATCCGTACAAGTTCTATGAGATTAAGAATGCTACTGAAAAGGATAGCTTCATTTCTACAGCTGGAATACCTTACAATGCTGCCAACATATA 1658 0.4855 MLAAVAHGEEEEHGMFEEIGQIASSQKFTNVDMVCRSTEFQNTCKESLANAGNGSTDMKDLFKAGLNAAMEEMKKQIHNSTLFKELSTDDSTKQALDVCKEVLGFAVDSLHASIHKLGRFDIHKLQDYSYDLKIWLSATLTHQQTCLDAFEDTTTNAGKEMTRVLNSSMELSSNALDMVTGFSDLLKNFKFGSGNRKLMSASEEATMDDGFHSWVSEGHRRLLQVAPEGIKPNVVVAQDGSGDYKTLTDALKTIPKKNRTPFVIYVKAGIYKEYVNVMKHMTYVTIIGDGPTQTRFTGNKNYLDGVKTYFTATFGVNAVYFTAKNVGFENTAGSLKHQAVALRVTSDKAVFYNCFIDGYQDSLYVQSQRQFYRDCSISGTIDFVFGDAAVVFQNCKLIVRKPQDNQNCIVAAGGRMKPDDPNGLIFQSCHFTAEPDYLPWKATSGRTSYLARPWKPYAKTVIVDSTIDGIFDPKGYLDWEGTVHHQTCSAFEFNNKGPGADTSQRVKWPGVKVLSGPEAATYYPYKFYEIKNATEKDSFISTAGIPYNAANI 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01476 552 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 182 IPR035513 -
Bva10g01476 552 ProSitePatterns Pectinesterase signature 2. 377 386 IPR033131 -
Bva10g01476 552 Gene3D - 228 550 IPR012334 -
Bva10g01476 552 ProSitePatterns Pectinesterase signature 1. 258 277 IPR018040 -
Bva10g01476 552 SUPERFAMILY Pectin lyase-like 230 525 IPR011050 -
Bva10g01476 552 Pfam Plant invertase/pectin methylesterase inhibitor 31 178 IPR006501 GO:0004857
Bva10g01476 552 TIGRFAM PME_inhib: pectinesterase inhibitor domain 30 178 IPR006501 GO:0004857
Bva10g01476 552 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 182 IPR035513 -
Bva10g01476 552 SMART PMEI_2 24 178 IPR006501 GO:0004857
Bva10g01476 552 CDD PMEI-like_3 34 183 - -
Bva10g01476 552 PANTHER PECTINESTERASE 1 548 - -
Bva10g01476 552 PANTHER PECTINESTERASE 1 548 - -
Bva10g01476 552 Pfam Pectinesterase 233 527 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01476 Bva-Chr10 10142669 10148594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01476 1 527 Carbohydrate Esterase AT5G49180 45.251 4.28e-171 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01476 K01051 - gmx:100820068 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01476 10 10142669 10148594 Bva10g01476 10 10142669 10148594 ECH