Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01470 ATGGGTATTGAGTCTGATATTTTTATTGCTAATTCAttgataaatatgtatgcaaaaTCAGGATATTCAAGTATAGCATCCACCATCTTCAACAAGATGGGCGAAGGAAATATTGTGTCTTGGAATTCCATGGTTGCTAATTTTGCTCAGAATAAGCTTGAGTTTGCAGCTGTAGACCTAGTAAGGCCAATGCCAGCACATGGAGAAATCCCAAGTAGTGTAACCTTCACAAATGTTCTTCCAGCTTGCACTAGATTAGGCTATCCTGGAACAAGTAATTGCTCCATATCTCTTGATTTTCCAGAAATGAGACTTTTTGGGAGCAATAATGATGATCGGTTACTAGGTGCTGGTCTCACAAGCCTTGAATATGGATACCTTTGTGAGATCATGGATCGTTCAGTTTGGGTtccacaaatttttaattgtggTGCGCCTGACACAGGCGTGAATGGTGCTTTCTTCAATGCCAAGAACGTTgggtttgagaatgcagcagGGCCTGCGAAGCACCAAGCAGTTGCACTCCGTGGAACTGCAGACAACTGCTTCTTCAACAACTGCATGATAGATGGTTACCAGGACACACTCTACGTCCAATCTTA 605 0.3868 MGIESDIFIANSLINMYAKSGYSSIASTIFNKMGEGNIVSWNSMVANFAQNKLEFAAVDLVRPMPAHGEIPSSVTFTNVLPACTRLGYPGTSNCSISLDFPEMRLFGSNNDDRLLGAGLTSLEYGYLCEIMDRSVWVPQIFNCGAPDTGVNGAFFNAKNVGFENAAGPAKHQAVALRGTADNCFFNNCMIDGYQDTLYVQS 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01470 201 Gene3D - 139 201 IPR012334 -
Bva10g01470 201 SUPERFAMILY Pectin lyase-like 149 200 IPR011050 -
Bva10g01470 201 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 87 - -
Bva10g01470 201 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 87 - -
Bva10g01470 201 Gene3D Tetratricopeptide repeat domain 1 89 IPR011990 GO:0005515
Bva10g01470 201 Pfam Pectinesterase 149 201 IPR000070 GO:0030599|GO:0042545
Bva10g01470 201 Pfam PPR repeat 11 35 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01470 Bva-Chr10 10119887 10125191 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01470 149 201 Carbohydrate Esterase AT5G49180 67.925 2.50e-17 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01470 - - lja:Lj0g3v0005979.1 143.28