Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01459 atggaGAAAGAGCATGACTATTCGGCACCCATGCCTCCAAGTTTTAACACACTAGATTATTCTCAGTATCCACAGAATCAGCAGCTCATGAAGTTTCGACTGGGAGAAACTTCCGGCGAAAGCAGCAACGGGATGGTGGATTACATGCTGCATAATCCACATCAACAGCAGCCAATGCCTTCTGGGTTTTATGGTACGGGTGGCTCTTATTTTGATAAACTGAGTTTTGCAGATGTGATGCATTTTGCTGATTTTGGACCCAAGTTGGGCTTGAACCAAACCAAGGCTGCTGAAGATGAACCGGGCTTAGACCCGGTTTATTTCCTCAAGTTTCCGGTGTTGAACGATAAGAATATGGAGGATCAGAATAATCTGATGGTTAGTTCATCACAAGCTGGAGAAGCAGAAAATGATGAGAGGTTCAAAGGGATGAGCGTGGAAGATAAATCACCAGCTGGAGGAGTGAAAGATCACGATGAAGAAGCTTGGGTTTcggataataataataataactctGTGGAGCTTCGTTTTCTAGGCGAGGAAGTTCAGAAGAACCCTACACAggaaaacaagaacaaaaggaaaagacctAGGACAATCAAGACAAGCCAGGAAGTTGAGAGTCAGCGCATGACTCACATCGCAGTTGAAAGGAACAGAAGGAAGCAAATGAACGAGCATCTTCGTGTCTTGAGATCCCTCATGCCAGGTTCATACGTTCAAAGAGGGGATCAAGCTTCAATAATTGGAGGAGCCATAGAGTTTGTGAGGGAATTGGAGCAACTTCTTCAGTGCTTGGAATCGCAGAAGAGGAGGAGACTGCTTGGAGAAGCAGGTCATTCAAGACCACAGGTGGGAGATTCCTCACTTCAAATGCAGCAGGCTCCATTCTTTCCACCTATGCCTCTACCAAATGATCCCCAGATGCTTGAGACTGGACTTCTCGAAGAGACGGCAGAAAACAAGTCTTGTTTGGCTGATGTAGAAGTGAAACTTCTAGGATTTGATGCCATGATCAAGATTCTATCAAGAAGAAGGCCGGGTCAGCTGATCAAGACCATTGCCGCACTTGAGGATCTGCAGCTTATTATCCTTCACACCAACATCACCACCATTGAACAAACAGTCCTTTATTCCTTCAACGTCAAGGTAGCAAGCGATTCAAGGTTCACAGCAGAAGATATAGCAAGCTCTGTTCAACAGATATTTAGTTTTATCCATGCAAACACTGGCATTTG 1238 0.4321 MEKEHDYSAPMPPSFNTLDYSQYPQNQQLMKFRLGETSGESSNGMVDYMLHNPHQQQPMPSGFYGTGGSYFDKLSFADVMHFADFGPKLGLNQTKAAEDEPGLDPVYFLKFPVLNDKNMEDQNNLMVSSSQAGEAENDERFKGMSVEDKSPAGGVKDHDEEAWVSDNNNNNSVELRFLGEEVQKNPTQENKNKRKRPRTIKTSQEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAGHSRPQVGDSSLQMQQAPFFPPMPLPNDPQMLETGLLEETAENKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVKVASDSRFTAEDIASSVQQIFSFIHANTGI 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01459 412 CDD ACT_UUR-ACR-like 338 402 - -
Bva10g01459 412 PANTHER TRANSCRIPTION FACTOR FAMA 25 410 IPR044283 GO:0003700|GO:0010052
Bva10g01459 412 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 208 274 IPR036638 GO:0046983
Bva10g01459 412 MobiDBLite consensus disorder prediction 128 167 - -
Bva10g01459 412 Gene3D - 206 277 IPR036638 GO:0046983
Bva10g01459 412 Pfam Helix-loop-helix DNA-binding domain 209 260 IPR011598 GO:0046983
Bva10g01459 412 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 208 259 IPR011598 GO:0046983
Bva10g01459 412 MobiDBLite consensus disorder prediction 135 164 - -
Bva10g01459 412 MobiDBLite consensus disorder prediction 179 208 - -
Bva10g01459 412 SMART finulus 214 265 IPR011598 GO:0046983
Bva10g01459 412 CDD bHLH_AtFAMA_like 211 283 - -
Bva10g01459 412 PANTHER TRANSCRIPTION FACTOR FAMA 25 410 - -
Bva10g01459 412 MobiDBLite consensus disorder prediction 186 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01459 Bva-Chr10 10053560 10055843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01459 34 412 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 62.379 3.51e-149 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva10g01459 HLH 8.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01459 - - qsu:112039857 526.939