Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01428 ATGATAAGGAGTCCCAAAGGCAATGATGAGACAAGTGAGCGAACTCTTCCGAGGGAACAATCTACTACTTGGAACAACGTGTTGTTTAGGCAAACGCTGAGAGTGAATGTTACAGCTTCGTCTACAGGATGGAAGTACACATACTCAGCTTTGGCTGCTACTTTATATGCTGGTCCAGATCCTCCAGATCAGGGCAGGGAATCATGCTCAGCCGCCTTGTATCCGAGTCCTTTCTATTCTCTCCTACCCTTCTGCTGCAAATTCACAGCTTGTTTTTGCACTGCGTCGACAGGCTTGTTTCAGCTCAGCGATAGGAacttaaattcattaaatattttcagTGAGATGGGggtcaaggaaaagaaacctgcgaagaagaatttgaaaaaggCTACTGCTAAGCTCTCTGTTCCCAACAACAAAACAGAGGCTGCTGATTTTCTGCCCTTGGAAGGTGGGCCTGCACGAAAACTTCCCCAACAAAATCCACCAGAGAGTACTGCCACTGTTTTATATGTTGGACGACCACCACATGGATTCTATGAGAAGGAGATGGAAGGTTATTTTGGACAATTTGGTACTATCAAGAGAGTGAGAATTGCTAGAAATAAAAGGACaggaaaatcaaaacattatGGATTTATAGAATTTGAATCTCCTGAGGTGGCAAAAATTGTAGCTGATACTATGCATAATTATCTGCTATTTGAACACCTTCTGCAAGTTTACCTGATACCTACAGAGCATGTTCATCCAAAAATATGGAAAGATTTCAACTACCGTTACAAACCATTAGACACagtgaaaattgaaagaatgcGACATGACAAGGAGAGAACGAGAGAAGAACAGAAGAAGTTTGTGGAAAAGATCCTAAAGCGTGATCAAAAACGACGAAAGAGGATAGAGGCTGCTGGCATTGATTACGAGTGCCCTGAGATTGTTGGTAGCATCCAGCCTGCTCCAAAGAAGATCAAGTTTGAAGATTA 989 0.3903 MIRSPKGNDETSERTLPREQSTTWNNVLFRQTLRVNVTASSTGWKYTYSALAATLYAGPDPPDQGRESCSAALYPSPFYSLLPFCCKFTACFCTASTGLFQLSDRNLNSLNIFSEMGVKEKKPAKKNLKKATAKLSVPNNKTEAADFLPLEGGPARKLPQQNPPESTATVLYVGRPPHGFYEKEMEGYFGQFGTIKRVRIARNKRTGKSKHYGFIEFESPEVAKIVADTMHNYLLFEHLLQVYLIPTEHVHPKIWKDFNYRYKPLDTVKIERMRHDKERTREEQKKFVEKILKRDQKRRKRIEAAGIDYECPEIVGSIQPAPKKIKFED 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01428 329 Coils Coil 270 290 - -
Bva10g01428 329 CDD RRM_NIFK_like 170 242 - -
Bva10g01428 329 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 116 328 - -
Bva10g01428 329 PANTHER - 116 328 - -
Bva10g01428 329 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 171 238 IPR000504 GO:0003723
Bva10g01428 329 Gene3D - 119 244 IPR012677 -
Bva10g01428 329 SUPERFAMILY RNA-binding domain, RBD 152 253 IPR035979 GO:0003676
Bva10g01428 329 SMART rrm1_1 170 243 IPR000504 GO:0003723
Bva10g01428 329 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 169 247 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01428 Bva-Chr10 9881440 9886598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01428 169 242 Eukaryotic Initiation Factors Gene Family AT1G71770 31.081 3.17e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01428 K14838 - gmx:100778780 342.043