LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva10g01422	ATGCGAAATTCATGGGCAGATTTGGCTGCAAATTCTGCAGCTGAAAATGCGGTTCCTGGTTCTTCTGCCAGCAATGCGGGAACTGGTAACACCTCAGCTCCTGCACGGGTATATGTTCCTCCGCATCTTAGGAACCGCCCCCCGGTTGCTGAGTCCCCTGCTCCAGCATATAGTGGCCCTACCTCTGGTACTGGACCTGGGCCTTCTGCTAATGCTGGATCACGTTGGGCTGCACCCAGGAATGACTACCGTCCAGGGTATGGTGGCAGTGGTCGCACAAGTGGATGGGGAAACAAAAGTGGTGGTTGGGATAATCGAGGTAAGGAACGGGAAGTCAATCCCTTTGGAGATGAGGATGGTGCGGAACAGGCATTTAGTGAGCAGGAGAATACAGGGATAAATTTTGATGCATATGAAGACATTCCGGTGGAGACCAATGGTGATAATGTGCCTCCGCCTGTGAATACATTTGCAGAAATTGACTTGGGTGAAGCACTTAATCTGAATATTAGAAGGTGCAAATATGTAAAGCCGACACCCGTTCAGCGGCACGCCATCCCAATATCCCTTGCTGGACGGGATTTGATGGCTTGTGCACAGACTGGTTCTGGAAAGACTGCTGCATTTTGTTTCCCGATCATTAGTGGAATTATGAGGGGCCAACCTGCACAAAGGCCACGTGGGGTTCGAACAGTATATCCCCTTGCTCTCATTCTATCGCCAACTAGGGAGCTATCAATGCAAaTACATGAAGAAGCTAGGAAGTTCTCATATCAAACACAGGTTAGAGTGGTAGTTGCTTATGGTGGAGCACCAATAAATCAGCAGCTGCGGGATCTTGAGAGAGGAGTTGACATTCTTGTTGCAACTCCTGGACGATTGGTAGATTTGCTGGAGAGGGCGAGAGTTTCACTGCAGATGATCAGATATTTAGCCTTAGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGGAAGATCGTTGAACAGATGGACATGCCTCCACCAGGTGTCAGACAGACTATGCTGTTTAGTGCTACTTTTCCAAAAGAGATACAGAGATTGGCCTCTGATTtcctttcaaattatattttcctgGCTGTTGGAAGAGTGGGTTCAAGTACTGATTTAATTGTCCAAAGAGTTGAGTATGTTCAGGAGTCTGACAAGAGAAGTCACCTTATGGACCTTCTTCATGCACAGATAGCAAATGGTGTACAGGCAAAGCAAGCTTTGACTTTAGTATTTGTGGAGACAAAAAAGGGAGCAGATTCGCTGGAACATTGGTTGTGTCTCAATGGCTTTCCAGCAACTACTATTCATGGTGACAGAACACAACAGGAAAGAGAACTGGCATTAAGGTCATTTAAAAGTGGAAATACCCCTATACTGGTTGCAACTGATGTGGCTGCACGTGGTCTTGATATCCCCCATGTTGCCCACGTTGTCAACTTTGATCTGCCAAACGATATTGATGATTATGTACACCGAATTGGAAGGACAGGACGAGCTGGGAAGACTGGCCTGGCAACTGCGTTCTTTAATGACAACAATGCGTCTTTAGCAAGGGCTTTGGCAGAGCTGATGCAAGAAGCAAATCAAGAAGTACCTGTTTGGCTCTCAAGGTATGCTGCTCGAACTTCCTTTGGAGGAAGGAACCGAAGATCAGGAGGAGGCCGGTTTGGTGGCCGTGACTTTCGAAGGGAAGGCTCTTTCAATAGGGGTGGTGGTTCTGATTACTATAGTGCAGGCAACAGTAGTGGCGGATATGGAGCTTCTGGTGGGTATGCTGGAGGATATGGTCCTGGGGTGACCAGTGCCTGGGACTG	1841	0.4737	MRNSWADLAANSAAENAVPGSSASNAGTGNTSAPARVYVPPHLRNRPPVAESPAPAYSGPTSGTGPGPSANAGSRWAAPRNDYRPGYGGSGRTSGWGNKSGGWDNRGKEREVNPFGDEDGAEQAFSEQENTGINFDAYEDIPVETNGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGQPAQRPRGVRTVYPLALILSPTRELSMQIHEEARKFSYQTQVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQIANGVQAKQALTLVFVETKKGADSLEHWLCLNGFPATTIHGDRTQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNDNNASLARALAELMQEANQEVPVWLSRYAARTSFGGRNRRSGGGRFGGRDFRREGSFNRGGGSDYYSAGNSSGGYGASGGYAGGYGPGVTSAWD	613

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva10g01422	613	Pfam	DEAD/DEAH box helicase	179	359	IPR011545	GO:0003676\|GO:0005524
	Bva10g01422	613	CDD	SF2_C_DEAD	382	518	-	-
	Bva10g01422	613	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	186	370	IPR014001	-
	Bva10g01422	613	CDD	DEADc_DDX3_DDX4	156	376	IPR044763	GO:0003724\|GO:0005524
	Bva10g01422	613	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	155	183	IPR014014	GO:0003724
	Bva10g01422	613	SMART	helicmild6	428	509	IPR001650	-
	Bva10g01422	613	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	235	527	IPR027417	-
	Bva10g01422	613	MobiDBLite	consensus disorder prediction	103	117	-	-
	Bva10g01422	613	SMART	ultradead3	174	385	IPR014001	-
	Bva10g01422	613	Gene3D	-	112	372	IPR027417	-
	Bva10g01422	613	MobiDBLite	consensus disorder prediction	1	32	-	-
	Bva10g01422	613	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	408	548	IPR001650	-
	Bva10g01422	613	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED	55	581	-	-
	Bva10g01422	613	Pfam	Helicase conserved C-terminal domain	394	509	IPR001650	-
	Bva10g01422	613	MobiDBLite	consensus disorder prediction	1	118	-	-
	Bva10g01422	613	Gene3D	-	373	552	IPR027417	-
	Bva10g01422	613	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	55	581	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva10g01422	Bva-Chr10	9857077	9863628	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva10g01422	153	542	Eukaryotic Initiation Factors Gene Family	AT3G19760	31.714	3.03e-61	207

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva10g01422	K11594		-	gmx:100795756	1003.43