Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01394 ATGAGGAACCAGTCATCAGGAAGAAGTGGAGGAGGAGCAAGAACGACGTCGTCTGCTGGTGGCAGTGGCGGTGGTAACAGTAACAATAACACAAACAATGGTAGTAGTACTAAAACTCCATGCTGCACCAAAGTGGGTCTGAAGAGAGGACCATGGACTCTAGAAGAAGACGAACTTTTATCCagttacattaaaaaagaaggagaagggcGATGGCGAACTCTTCCAAAGCGGGCCGGACTCCTCCGCTGCGGCAAGAGCTGCCGTCTCCGCTGGATGAACTACCTCCGCCCCAACGTCAAGCGCGGCCAGATCGCCCCCGACGAAGAAGATCTCATCCTCCGCCTCCACCGCCTCCTCGGCAACCGGTGGTCTTTGATAGCTGGGAGAATTCCTGGGCGAACGGATAATGAGATAAAGAATTACTGGAATACCCATCTCAGCAAGAAGCTCATAAGCCAAGGGATAGATCCCAGAACCCACAAGCCACTTAACCCTAATTCCTCTACTCCACACCCTCCAaatgcttcttcttcatcaaaacCCAATCTTCTTCCGCCTCCACCTCCTTCTAAACCTAATCCAATCTCTACTGATGACCAGGAAACCCCACCTGCTGTGAGCCAAGAAAACGGCTACTTTGATCATTTGGGTCATCTCTATCAATCTTATGGGAACTTACCGGGAGCTGTAACGGATTCTGATCATGGATCTGCAATGGAGTTCAGAAGCGATACCAATGTCATTAGTAATGAAGATGAGGATGGTATCAATTACTGTTCTGATGAtggtttctcttctttcctaaATTCACTCATCAACGAGGAGGCTTTTGCTGCTCAGCACCAACTCCACCCAGCTACCAGTAATGGGATTTATGCAACATCTTCATCTTCCGATCAACCTTTGACTACAAACATCCATCCATCAAGTTTTGGCTTTGGTGCAGTTGGTTGGGAATCGGCAATCATGGCTTCTACTGCTTCTGCTCTTGGACAGAATGACCCTAAGAGTACTGTTGAAGATCATGTTGAATA 1037 0.4552 MRNQSSGRSGGGARTTSSAGGSGGGNSNNNTNNGSSTKTPCCTKVGLKRGPWTLEEDELLSSYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPNVKRGQIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNPNSSTPHPPNASSSSKPNLLPPPPPSKPNPISTDDQETPPAVSQENGYFDHLGHLYQSYGNLPGAVTDSDHGSAMEFRSDTNVISNEDEDGINYCSDDGFSSFLNSLINEEAFAAQHQLHPATSNGIYATSSSSDQPLTTNIHPSSFGFGAVGWESAIMASTASALGQNDPKSTVEDHVE 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01394 345 PANTHER TRANSCRIPTION REPRESSOR MYB5-LIKE 32 328 - -
Bva10g01394 345 ProSiteProfiles Myb-like domain profile. 97 147 IPR001005 -
Bva10g01394 345 Pfam Myb-like DNA-binding domain 49 96 IPR001005 -
Bva10g01394 345 Pfam Myb-like DNA-binding domain 106 147 IPR001005 -
Bva10g01394 345 ProSiteProfiles Myb-like domain profile. 44 96 IPR001005 -
Bva10g01394 345 Gene3D - 49 101 - -
Bva10g01394 345 Gene3D - 105 172 - -
Bva10g01394 345 CDD SANT 107 147 IPR001005 -
Bva10g01394 345 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 32 328 - -
Bva10g01394 345 CDD SANT 51 96 IPR001005 -
Bva10g01394 345 MobiDBLite consensus disorder prediction 160 179 - -
Bva10g01394 345 SUPERFAMILY Homeodomain-like 46 143 IPR009057 -
Bva10g01394 345 MobiDBLite consensus disorder prediction 1 41 - -
Bva10g01394 345 SMART sant 48 98 IPR001005 -
Bva10g01394 345 SMART sant 101 149 IPR001005 -
Bva10g01394 345 MobiDBLite consensus disorder prediction 180 195 - -
Bva10g01394 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 97 151 IPR017930 -
Bva10g01394 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 96 IPR017930 -
Bva10g01394 345 MobiDBLite consensus disorder prediction 156 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01394 Bva-Chr10 9693680 9695556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01394 35 299 MYB Transcription Factor Family AT3G13540 53.650 9.28e-87 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva10g01394 Myb_DNA-binding 1.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01394 K09422 - jre:108982488 367.081