Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01389 ATGATCCAAAAATCAAACGAGTCGGATCGCCGGGTCTTGAAGTTTCCGGCAGTTCACCCCTGTGAAAATATCTCTCCTGTCACCCTCCTCACTTCTCTGATTACCCTAtctaagaaaatttcaaatcacaAATCCCAACACTTCACTAGCAATAAGCAAAATGCGAGAAAAGCTATAATACTTATCGAGGGTCTTCAAGTGTTTCTCGAAGAGATCCGAGACCAGAAATGGAGCCTACTTGATTCTGTGGTCCTGAGCTTTTCAGAGCTCCATTTCACTTTCCAGAAGCTCCTATTCTTGTTAGAGGACTGTACCCGTGATGGTGCTCAGCTATGGATGTTGATGGAGTCGGATCGGGTCGCAACACTGTTCCGGGTCTTGTCCAGATCAATAGCCACAGCACTGGATGTTTTCCCTTTGAGCTCTGTTCAAATTTCACAGGAAGCAAAGGAACAAGTGGAGTTGCTAATGAGGCAGGCAAGAAAAGCCAGGTTGGAAGTTGAACCGGATGATGAACAGGTCATGATGGGTCTGTTCTCGATTTTGAATCAATTTGAGAATAGGATTACTCCAAGTAAGAGTGATCTAAAATGGGTTCTTGCTCATATTGGGATTAGAAAATGGAGTGACTGCAATAAAGCGCTCAAGTTTCTGGATTCAGAAATGGGATTAGAGTGCTTGAAtgaggaaaagagaaatgtgGCATTTTTAAGCAGTTTAATGGGGTTCATGAGCTATTGCAGATGCGTGGTGTACAACGTTGTTGATGATGAAGAGGACGATCCAAAATCGAATCGCAGAgaaagcagcagcagcagcactGACAGTGACATCCTAGGTTGTCTGAACCCAGATGATTTTCGATGTCCAATCTCTCTTGAGATCATGACTGATCCTGTTACAATCGAGACAGGTCATAGCTATGATCGCTCTTCAATTCTCAAATGGTTTAGGAGTGGGAATCCAACTTGTCCCAAGACAGGTAAAAGGCTTAGCAGCATTGAATTGGTCCCCAATTTGGTCCTACGCAGATTGATTCAGCAATATTGCTCTGAAAATGGCATTCTTATTGCTGATCCGGCTCGTCGGAACCATGACATCTCGAGGACAGCTCAACCTGGAAGCTTGGTAGCAGAGGAAGCCATGAAAATGGTGGCAAATTTCCTCACTTGCAGGCTTGAAACTGGAACAGTGGTACAGAGGCATAGAGCTGCATATGAGATTAGGCTTCTTACCAAAACAAGCATTTTTTATCGGTCTTGTTTGGTGGAGGCAAGTGCAATTCCTCATTTATTGCAGCTATTGTTATCTAAGGATTCATCAACACAAGAGAATGCCACTGCAGCACTTCTGAACCTCTCAAAACTCCCCAAGAGCAGAACTGTAATAGTTGAGAATTGGGGATTGAAATTGATTGTGGGTGTCCTAAACAAGGGTCTAAAAATGGAAGCTCGCCAGCATGCTGCTGCTATATTGTTCTACGTAGCTTCAAATGAGGAGTACCCGAGACTAATCGGAGAGGAACCAGAAGCAATTCCATCATTGATCAAGCTCATCAAAGAAGGGTCTGGTAGAGCCAAAAAGAATGGCTTGGTTGCAATGTTTACCCTCACCATGCACCCTGAAAATCACAGGAGATTACTTGCAGCAGAAGCAATCCCTATGCTGGTAAACATGTTAAAATCCTGTGATAGACAAGACCTTGTTACTGATTCACTTGCAATTCTAGCTACACTAGCTGAGAAAATTGATGGAACAATCGAAGCGCTTCGCTGTGGAGGTTTACATCCAGttgttgaaattattaaatcctCAACTTCAAGGACGGGAAAGGAGTACTGCGTTTCCTTGTTGCTTTCTCTATCAATCTATGGAGGAGCAGATGTGGTTGCTGACTTGGTGAAGAGTTCTTCTCTCATGGGATCCTTATATTCGATACTCGGCGAAGGCACAGCTCGAGCAAGCAAGAAAGCCAGTGCTCTCATCAGGGTCCTCCAAGATTTTTTTGAAAGGAGGTCCTCTGGTTTCAGGCCTTCAGTTCTTCCTCAAGAACAATTCGTTCACGCATGGTA 2072 0.4252 MIQKSNESDRRVLKFPAVHPCENISPVTLLTSLITLSKKISNHKSQHFTSNKQNARKAIILIEGLQVFLEEIRDQKWSLLDSVVLSFSELHFTFQKLLFLLEDCTRDGAQLWMLMESDRVATLFRVLSRSIATALDVFPLSSVQISQEAKEQVELLMRQARKARLEVEPDDEQVMMGLFSILNQFENRITPSKSDLKWVLAHIGIRKWSDCNKALKFLDSEMGLECLNEEKRNVAFLSSLMGFMSYCRCVVYNVVDDEEDDPKSNRRESSSSSTDSDILGCLNPDDFRCPISLEIMTDPVTIETGHSYDRSSILKWFRSGNPTCPKTGKRLSSIELVPNLVLRRLIQQYCSENGILIADPARRNHDISRTAQPGSLVAEEAMKMVANFLTCRLETGTVVQRHRAAYEIRLLTKTSIFYRSCLVEASAIPHLLQLLLSKDSSTQENATAALLNLSKLPKSRTVIVENWGLKLIVGVLNKGLKMEARQHAAAILFYVASNEEYPRLIGEEPEAIPSLIKLIKEGSGRAKKNGLVAMFTLTMHPENHRRLLAAEAIPMLVNMLKSCDRQDLVTDSLAILATLAEKIDGTIEALRCGGLHPVVEIIKSSTSRTGKEYCVSLLLSLSIYGGADVVADLVKSSSLMGSLYSILGEGTARASKKASALIRVLQDFFERRSSGFRPSVLPQEQFVHAW 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01389 690 Pfam Armadillo/beta-catenin-like repeat 419 454 IPR000225 GO:0005515
Bva10g01389 690 SUPERFAMILY RING/U-box 271 359 - -
Bva10g01389 690 Coils Coil 146 166 - -
Bva10g01389 690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 283 357 IPR013083 -
Bva10g01389 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 426 468 IPR000225 GO:0005515
Bva10g01389 690 CDD RING-Ubox_PUB 287 329 IPR045210 -
Bva10g01389 690 MobiDBLite consensus disorder prediction 259 278 - -
Bva10g01389 690 PANTHER U BOX DOMAIN-CONTAINING 4 678 - -
Bva10g01389 690 Gene3D - 510 665 IPR011989 -
Bva10g01389 690 SMART arm_5 414 455 IPR000225 GO:0005515
Bva10g01389 690 SMART arm_5 540 581 IPR000225 GO:0005515
Bva10g01389 690 SMART arm_5 456 497 IPR000225 GO:0005515
Bva10g01389 690 Pfam U-box domain 284 353 IPR003613 GO:0004842|GO:0016567
Bva10g01389 690 ProSiteProfiles U-box domain profile. 282 356 IPR003613 GO:0004842|GO:0016567
Bva10g01389 690 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 18 4 678 - -
Bva10g01389 690 Gene3D - 389 509 IPR011989 -
Bva10g01389 690 SMART Ubox_2 286 349 IPR003613 GO:0004842|GO:0016567
Bva10g01389 690 SUPERFAMILY ARM repeat 386 665 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01389 Bva-Chr10 9672080 9674448 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01389 1 690 U-box Gene Family AT1G60190 46.362 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01389 - - gmx:100795816 840.106