Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01340 ATGAGCAGAGAGGACTCCCCAGAGCCTGCCAGTTGGACCCTGCATGCCGCAAAGCGAGATGGCAGGGAATTTCGTATGGCAGCTGGCACTCATTGTTGCAAAAGAATACCAGGTCGGGCTGAGTTGGACTCTGGTACGCTGATCCGGTCGGGTTCGGGAAAATCTGCTCGCTCAGCCAGTAagccatttctttctttcgactgcGAGTCCTTCTCCGGTTCTCCCTGCGCTGCTTCGCCTGTGTTTTCTTCTCGCAGGAGATTGTTgagTTATTTTACTGATAGCAGAATTAGGAAAGAATCACTTATGGTTATGGTCCTCAGATTTCGTACCATCTTCCTTGCAGTGCAAGccacaaattttcaaacagtGAGTTCATATGCTGCATCGAGGTGTTGTCATTTTGTGTCAGAATTCAGTCGCAGTGCTTTAGGCAACAATTTGCAACAGGCACTCAATCTCACTCAAAGTAGTGTTGGGATTTTCTGGGATTTAGACAACAAACCTCCCAAGTCATTCCAGCCTTATGATGCTGCCATCAAACTGAAAACGGCTGTATCTTCCTTTGGGGTCATTCGGCATATGATAGCTTATGCAGATCGCCACACTTTCAGCCATGTACCTCAAGCTGCTAAGGAAcagagaaaagagaggaagTTGTTGAATCATTTAGAGAATAAAGGTGTAATCAAGCCTGTTGAGCCTTATCTTTGTCGGGTTTGtgggagaaaattttatacaaatgaGAAGCTTGTTAATCATTTCAAGCAAATTCATGAGCGTGAGCATATGAAAAGATTGAACCAGATTGAGTCAGCAAAGGGGAGCAGAAGGGCGAAATTGGTAGGTAAATATTCTATGAAAATGGAGAAGTATAAGAATGCTGCAAGAGATATTTTAACACCCAAAGTGGGCTATGGTCTGGCAGATGAGCTAAAACGGGCAGGGTTTTGGGTCCAGACTGTGTTGGATAAACCACAAGCTGCAGATATTGCACTAAAAGATCACATGGTGGATATGATGGATAATAGGCGGGTAGACTGTGTGGTTCTGGTGTCAGATGATTCTGATTTTCTTGGTGTTTTAAAGGAGGCAAAGCTACGTTGTCTCAAGATAGTTGTCATTGGGGATACAAATGATGGGGTCTTGAAGAGGACGGCTGATGCTGCTTTTTCTTGGGAGGAAATCTTGATGGGGAAATCTAAGAAAGAGGCAGTGTCAGTTGTGGAAAAGTTGACAGACCGTGACATTTTAAGAAGATTAGAGTGGACATACAACCCAGAggtggaaaaacaaaaatttaatctgGATTGTATGGTTTATGAAGCGACAGATGATGAGGATTTTGAACATGTCTGTAATAAAGTTGATGATGCCTATAAACACAAGCAAGACTCAAGTGCTTGGTGGGAATTAGATTCTGATGACAATATCGTGAATGAACTGTCAGGCAAATG 1457 0.4063 MSREDSPEPASWTLHAAKRDGREFRMAAGTHCCKRIPGRAELDSGTLIRSGSGKSARSASKPFLSFDCESFSGSPCAASPVFSSRRRLLSYFTDSRIRKESLMVMVLRFRTIFLAVQATNFQTVSSYAASRCCHFVSEFSRSALGNNLQQALNLTQSSVGIFWDLDNKPPKSFQPYDAAIKLKTAVSSFGVIRHMIAYADRHTFSHVPQAAKEQRKERKLLNHLENKGVIKPVEPYLCRVCGRKFYTNEKLVNHFKQIHEREHMKRLNQIESAKGSRRAKLVGKYSMKMEKYKNAARDILTPKVGYGLADELKRAGFWVQTVLDKPQAADIALKDHMVDMMDNRRVDCVVLVSDDSDFLGVLKEAKLRCLKIVVIGDTNDGVLKRTADAAFSWEEILMGKSKKEAVSVVEKLTDRDILRRLEWTYNPEVEKQKFNLDCMVYEATDDEDFEHVCNKVDDAYKHKQDSSAWWELDSDDNIVNELSGK 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01340 485 PANTHER ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN 127 477 - -
Bva10g01340 485 ProSiteProfiles Zinc finger C2H2 type domain profile. 236 264 IPR013087 -
Bva10g01340 485 SUPERFAMILY beta-beta-alpha zinc fingers 234 262 IPR036236 -
Bva10g01340 485 Gene3D - 152 397 - -
Bva10g01340 485 ProSitePatterns Zinc finger C2H2 type domain signature. 238 259 IPR013087 -
Bva10g01340 485 Pfam NYN domain 308 388 IPR021139 GO:0004540
Bva10g01340 485 CDD PIN_LabA-like 246 377 - -
Bva10g01340 485 PANTHER - 127 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01340 Bva-Chr10 9365280 9370448 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01340 159 478 C2H2 Transcription Factor Family AT4G12240 62.187 6.23e-148 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva10g01340 NYN 8.5e-07 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01340 - - lja:Lj3g3v3326020.1 501.516