Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01293 ATGACCCCGCTTAGTCTCTACCAAAACCCCTTTCTAGTTTCTCACCGgcgagaaaagaaaaaaccttgCTCCCCTCAGGCATTCATCACAATGGCATTTTGCAACAAACTTGGGAATATCTTGAGGCAGAGTGCTGCTCAGAACAAACAATTACCTTCATCTATGCTCAATTACGTTCGTTGCATGTCCTCAAGCAAGCTTTTCGTTGGAGGCCTTTCATATGGAGTTGATGACCAGTCTCTTAGGGATGCATTTTCCAACTTTGGAGATGTGGTTGAGGCAAGAGTTATCACCGATAGAGACACTGGAAGGTCTAGGGGATTTGGATTTGTCAACTTCACGAGTAACGAATCAGCAGGTTCAGCACTTGCTGCTATGGATGGACAGGAGATAAATGGGCGAAGCGTTCGAGTGAGTTATGCTACCGATAGGGCATCTGGACCTCGTACTGGCGGTGGTTATCAAGGAAATGGAGGCTATGGTGACTCAGCCTATTA 497 0.4467 MTPLSLYQNPFLVSHRREKKKPCSPQAFITMAFCNKLGNILRQSAAQNKQLPSSMLNYVRCMSSSKLFVGGLSYGVDDQSLRDAFSNFGDVVEARVITDRDTGRSRGFGFVNFTSNESAGSALAAMDGQEINGRSVRVSYATDRASGPRTGGGYQGNGGYGDSAY 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01293 165 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 143 IPR000504 GO:0003723
Bva10g01293 165 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 31 162 - -
Bva10g01293 165 Gene3D - 41 165 IPR012677 -
Bva10g01293 165 SUPERFAMILY RNA-binding domain, RBD 59 161 IPR035979 GO:0003676
Bva10g01293 165 MobiDBLite consensus disorder prediction 142 165 - -
Bva10g01293 165 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 136 IPR000504 GO:0003723
Bva10g01293 165 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 31 162 - -
Bva10g01293 165 SMART rrm1_1 66 139 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01293 Bva-Chr10 9087303 9089745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01293 64 153 Eukaryotic Initiation Factors Gene Family AT4G34110 38.889 2.82e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01293 - - gmx:100527220 197.593