Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01260 ATGGTAGGAGTAGAAGAAAGCAAGGACCGGCCGGCGGGTGTTGCTGCTCACGGTCACAGGACATTTTCCCGGTCAGTTTCGTGGACTGATCGGTGTCCGACCAAGGCTACTTCTAACCTGAGGCCACCGCCGAATGGTAAGCCTCGATCCTTGTTGCCACCCCTTCAGCCCCTTTCTATCAGTAAGCGGAGTGTGGAGGAGTGGCCAAGTGCAGGATCTGATGATCTTGGAGTTTGGCCATGTCCACAAACTCCAAGAGGGTCAGCCACAGGTAAAGCCGTGGAGATTTCTGGTAATTCTACTTTGACCAAAGAATTTCAGTTCAAGAGGGATAAATTAGCCTTCTTTGATAAGGAATGCTCCAGAATTGCTGAGCATATATACTTGGGCAGTGATACAGtagccaagaatcatcaacttttgAGGCAAAATGGAATTACTCATGTCCTAAATTGTGTTGGGTTTGTTTGTCCTGAGTATTTCaaaagagattttgtctaCAAGACACTTTGGTTGCAGGACAGCCCAACAGAGGATATTACCAGCATCCTCTATGATGTTTTCGATTACTTTGAAGATGTTCGAGAGCAAGGTGGGCGTGTCCTTGTGCATTGTTGTCAAGGAGTTTCTCGATCAAACTCTCTGGTCATTGCATATCTCATGTGGAGGGAGGGACAAAGCTTTGAAGATGCTTTTCAATATGTCAAGACTGCACGAGGGataacaaatccaaatatgGGCTTTGCTTGTCAACTTCTGCAGTGCCAAAAACGGGTACATGCTATGCCTGCAAGTCCAAACTCTATGCTTAGGATGTATCGGATGGCTCCTCACTCACCATATGCCCCTCTTCATCTGGTGCCTAAGATGATAAACAATCCAGGTGCACAAGCGCTTGATTCTCGTGGGGCATTCATAATCCATGTTCCATCTGCTATATATATCTGGACAGGAAAAGATTGTACTTCTGTGATGTTATGTAATGCCCGGAAAGCAGCCTGTCAGGTTATCCATTATGAGAGGGTCACTGGTTCAACTCTGACTGTCAAAGAAGGCGAAGAGCCATCAGAGTTTTGGATTGCTCTCTCTGCCGAGCAACTCATATCAGGTAACGGTGAGAAAGAGAAGGTCAACAAGGAAGGAGTGTTGTGTTCTGAAAGCATGGAGATTGATGAAGCAGATACTCTTACCAATGGGATTGGTAGAAGAAAAGTTGATGATTATGAtttggattttgaaattttccacAAAGCACTTTCTGGTGGGGTTGTACCACCATTTTCTGAATCTAATGCAGGGTTAGAGACTTGCCTCCCTGCTAGAGAAAACGGCTGGGGGAGATTGAGGAGGAAATTTGCTAACGGTATCATGAAAGGATTGATCACATGCTCCAAACTGAACTGTGATGAATCATGTATGATTATTGGAGAACAAGATCAAGAGCAAGATTCTGTGGTTGATCCGTTGCCACCATCACCAACCCATCCCTGTGGTTCGCCAGATTCTTTTGAATGTTTTCCAGATAACAATTCAGACAAGGCAAAAGATACCTTTGAAGTCCCACAGTCTCCTCTGGCCTCAACACTCTCTCCTTCAAGTTCTGATTATGCAAGTTCATTTACATTTTCACCTTCATCTACAAACTGGTCTGACTTGTCATTCGTATCTTCTCGGCAATCATCACCTTCTGGCCTGGAATCAGCTGAACCCTTTTATGTTAAAGATGTATCATTCCCGGAGGAATCCTCTTTGCTTGACAAAGAAGCTGTCCCTTCACcttcaaagaaattttctgCTACCTATTTGCCATGCAAAGGATATTTCCCCTCTATTGCAGAGCGCAGAGGGAGTAATCCACCCCCTCTCATGTTGTTATCTTCGATCAATGAATCATCTCACGTCCACAAGAACCTGGTAAGATCACAGTCATTCTCTTTACCTGAGTTAGAGGATTATAATGTGATGAAGGATGTTAGTTGCAACCAATTTGAGTATGAAATCGAAAACAAGGGGAAAGGGCTAATTTCAAATGCTGATATCAATAGGTCAGAAAATGGTGAACCTCAAAGAGAGATTAATGATAAAGATGCTCAAGCTAGAAGTAAAGGAGAAGGGTA 2117 0.4247 MVGVEESKDRPAGVAAHGHRTFSRSVSWTDRCPTKATSNLRPPPNGKPRSLLPPLQPLSISKRSVEEWPSAGSDDLGVWPCPQTPRGSATGKAVEISGNSTLTKEFQFKRDKLAFFDKECSRIAEHIYLGSDTVAKNHQLLRQNGITHVLNCVGFVCPEYFKRDFVYKTLWLQDSPTEDITSILYDVFDYFEDVREQGGRVLVHCCQGVSRSNSLVIAYLMWREGQSFEDAFQYVKTARGITNPNMGFACQLLQCQKRVHAMPASPNSMLRMYRMAPHSPYAPLHLVPKMINNPGAQALDSRGAFIIHVPSAIYIWTGKDCTSVMLCNARKAACQVIHYERVTGSTLTVKEGEEPSEFWIALSAEQLISGNGEKEKVNKEGVLCSESMEIDEADTLTNGIGRRKVDDYDLDFEIFHKALSGGVVPPFSESNAGLETCLPARENGWGRLRRKFANGIMKGLITCSKLNCDESCMIIGEQDQEQDSVVDPLPPSPTHPCGSPDSFECFPDNNSDKAKDTFEVPQSPLASTLSPSSSDYASSFTFSPSSTNWSDLSFVSSRQSSPSGLESAEPFYVKDVSFPEESSLLDKEAVPSPSKKFSATYLPCKGYFPSIAERRGSNPPPLMLLSSINESSHVHKNLVRSQSFSLPELEDYNVMKDVSCNQFEYEIENKGKGLISNADINRSENGEPQREINDKDAQARSKGEG 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01260 705 PANTHER MKPA PROTEIN 1 651 - -
Bva10g01260 705 MobiDBLite consensus disorder prediction 22 44 - -
Bva10g01260 705 SMART dsp_5 119 258 IPR020422 GO:0006470|GO:0008138
Bva10g01260 705 MobiDBLite consensus disorder prediction 1 15 - -
Bva10g01260 705 ProSiteProfiles Dual specificity protein phosphatase domain profile. 119 261 IPR020422 GO:0006470|GO:0008138
Bva10g01260 705 MobiDBLite consensus disorder prediction 684 705 - -
Bva10g01260 705 CDD DSP 120 254 - -
Bva10g01260 705 Pfam Dual specificity phosphatase, catalytic domain 127 257 IPR000340 GO:0008138|GO:0016311
Bva10g01260 705 MobiDBLite consensus disorder prediction 1 56 - -
Bva10g01260 705 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 110 261 IPR029021 -
Bva10g01260 705 MobiDBLite consensus disorder prediction 677 705 - -
Bva10g01260 705 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 178 239 IPR000387 GO:0016311|GO:0016791
Bva10g01260 705 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 1 651 - -
Bva10g01260 705 MobiDBLite consensus disorder prediction 481 508 - -
Bva10g01260 705 Gene3D Severin 271 368 IPR029006 -
Bva10g01260 705 Gene3D Protein tyrosine phosphatase superfamily 92 261 IPR029021 -
Bva10g01260 705 SUPERFAMILY Actin depolymerizing proteins 265 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01260 Bva-Chr10 8881854 8883971 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01260 29 155 Protein tyrosine phosphatase (PTP) family AT3G55270 51.515 3.34e-35 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01260 - - lja:Lj6g3v0574850.1 862.062