Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01247 ATGCACAGGCAGTCCAACCTTCCCTACAGCTTCGGCCTAAGAGAAAACGTGGGTGCATCCTTCACCGTGATGGTTGTGGCTTTCCTCTCGGCTTTCGCCTTCATGGGTTTCTGCACGCTTTACCTCCGTCATTGCGCCCACTTGTACGTGGCCACCGGGAACCCGATCAGCGCGGCGGCGGAGCTGTGCCGCCGTGGTTGCAACCAGCAAGTCATCGATAACTGCCCCATCGTCAAGTATTCGACGGTGAAGGAGATCAAAATGGGGAAAGAAGCGCTGGAATGTGCGGTGTGCTTGGCTGAGTTCCAAGACTACGACAGACTCCGCTTACTGCCAAAATGCAATCACGTCTTCCACACAGATTGCATCGATGCCTGGTTGTCTTCTCACGCGACTTGTCCTCTTTGTCGTGCAAAGCTCACCTCCGATTGCGGCCAAAATCTCACCCAGCTGCTCCCTAGAAACATGAACGAACCTCAATATCCCCAAAACTATTCTAATAGAACACCGGAATCTTCATCAGCCGGTGAAATGGAGCGAAACCAGGTGGCGGTGGAGGTGTTGCCGGGCTCCGAGCTGCAGCTACCTGCTACAAGTATAGCAATCAACACAGTTGAGAATGTAACTCAAGTTTTCGCCTTGAATCAGATTCAGACTCCGAGGCCTTCACCTCCGCTGGGATTAGGATTATTGTTGGAGGCGCTTCCTCGGTCGCATTCGACGGGTCACTCATTGTTGGAGGTGGAACCCGAGCAGGGGAATTACCGGGATAGATGCACTCTGAGGTTGCCGGAACATGTGAAAAAGCAGATTCTGGCGAATCATAACAGGATTCGACGATTGCCCACAAGCGACATCGGTTTGCCCAAGCTATGGAGTCCCAGAAGAGAATGGAACGGGAGTGAGCTGGCCGAAGCAGCAAGCAGCCGACAAGTATG 938 0.532 MHRQSNLPYSFGLRENVGASFTVMVVAFLSAFAFMGFCTLYLRHCAHLYVATGNPISAAAELCRRGCNQQVIDNCPIVKYSTVKEIKMGKEALECAVCLAEFQDYDRLRLLPKCNHVFHTDCIDAWLSSHATCPLCRAKLTSDCGQNLTQLLPRNMNEPQYPQNYSNRTPESSSAGEMERNQVAVEVLPGSELQLPATSIAINTVENVTQVFALNQIQTPRPSPPLGLGLLLEALPRSHSTGHSLLEVEPEQGNYRDRCTLRLPEHVKKQILANHNRIRRLPTSDIGLPKLWSPRREWNGSELAEAASSRQV 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01247 312 SUPERFAMILY RING/U-box 88 143 - -
Bva10g01247 312 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Bva10g01247 312 PANTHER RING FINGER DOMAIN-CONTAINING 10 286 - -
Bva10g01247 312 SMART ring_2 95 136 IPR001841 -
Bva10g01247 312 MobiDBLite consensus disorder prediction 155 178 - -
Bva10g01247 312 CDD RING-H2_PA-TM-RING 94 137 - -
Bva10g01247 312 Pfam Ring finger domain 94 137 IPR001841 -
Bva10g01247 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 143 IPR013083 -
Bva10g01247 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL31-LIKE 10 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01247 Bva-Chr10 8807242 8808180 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01247 5 296 Rapid Response to Elicitors AT3G05200 34.667 9.07e-44 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01247 K10664 - zju:107425216 192.586