Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01243 ATGGGTTTTCATCAGAGAAAACTGCTGCAACTGCACAATCCAAGCTATGCTACCATGGCTGTTGGAAGGAATTGCAGCCCAGCACCTTCCCCTCTTCACTCACAGCTGAATCCACTGCGATCCTTCTTACCTTCATTGACGGTTGATGGTAATCATTTTCCCTCAGATTCAGATCAGAATCATGTAATCCTGGTAGGTATGATCGCCATAGCTTGCACGTTTGGTCTGGTCGTTTTTCTCATTACCATTTTCAAGATTCTTGCAAACTACCATTCGAGGAGACAGAATTTAAGCAGAAGCAATCTGCCGATACTATTCGATGTTCATGGAGATATTTCTTTCacagatgatgatgatgatgataggCAAGCCATTTACCACCCCATCTGGTTCATCAACACAGTGGGTCTCCAGCAATCAGTGATCGATTCTATCACAGTCTGTAAATACAGAAAAGACGATGGATTAATAGATGGAACAGAGTGTTCTGTTTGCCTCTCTGAATTCCGAGAAGAAGAAAGTCTCCGACTTTTGCCTAAATGCAGCCACGCCTTTCATATTCCCTGCATTGATACTTGGCTGAGATCGCATAAAAATTGCCCGTTGTGTCGTGCCCCTATAGTTTCTGAAGCTGCTGGTACAATTGCAGTCTCGGAAGGAAACGTGGTTGAgccaagtttcaatttttccgGAGCGAGCCAGAATACCCAGATGGAAAATTTGGAATACGATCGCATGGAAGAAGGAGGAAGCAGTGGGGTGAGGATTGGAGACGACGATTCTGACTCCGGCATGTTTCAGATTGATGACAGAAAGGAAATTCAAGACCCAgagaaaaatttgacaaattctGGGATTCGAATGGATTCAACGTTGATTCGGCAGCAAAAAGTGGAAGAGGAAATACAGCAGCAACCAGTGAGGAGGTCAGTTTCGATGGGTTCACCTGTTTCTGCGATGATATATCGAGCTTTGGTGGTTTTGAATTCTGAAATAGAAAACCCAGATAGCCATTTGgatgataagaaaaattcaagtagCAAGATCATCGACGCCATTGTTAAGCAGCGAAGTGCAAGTTCTCCAACCAGTTTCAGCGGAAGTTCATTGAAGAAGAGACCTATCTCAATGAAAAGATCATTTTCTCGCAATAGAAAACTGCAATTACCCAGACATTGCAGGAGCCAGAGCTCAACTCTGCCCTTATG 1208 0.4123 MGFHQRKLLQLHNPSYATMAVGRNCSPAPSPLHSQLNPLRSFLPSLTVDGNHFPSDSDQNHVILVGMIAIACTFGLVVFLITIFKILANYHSRRQNLSRSNLPILFDVHGDISFTDDDDDDRQAIYHPIWFINTVGLQQSVIDSITVCKYRKDDGLIDGTECSVCLSEFREEESLRLLPKCSHAFHIPCIDTWLRSHKNCPLCRAPIVSEAAGTIAVSEGNVVEPSFNFSGASQNTQMENLEYDRMEEGGSSGVRIGDDDSDSGMFQIDDRKEIQDPEKNLTNSGIRMDSTLIRQQKVEEEIQQQPVRRSVSMGSPVSAMIYRALVVLNSEIENPDSHLDDKKNSSSKIIDAIVKQRSASSPTSFSGSSLKKRPISMKRSFSRNRKLQLPRHCRSQSSTLPL 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01243 402 MobiDBLite consensus disorder prediction 353 402 - -
Bva10g01243 402 MobiDBLite consensus disorder prediction 353 375 - -
Bva10g01243 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 212 IPR013083 -
Bva10g01243 402 PANTHER RING-H2 FINGER PROTEIN ATL54 53 389 - -
Bva10g01243 402 SMART ring_2 162 203 IPR001841 -
Bva10g01243 402 SMART FANCL_C_2 158 211 - -
Bva10g01243 402 CDD RING-H2_PA-TM-RING 161 204 - -
Bva10g01243 402 MobiDBLite consensus disorder prediction 376 390 - -
Bva10g01243 402 Pfam Ring finger domain 161 204 IPR001841 -
Bva10g01243 402 ProSiteProfiles Zinc finger RING-type profile. 162 204 IPR001841 -
Bva10g01243 402 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 53 389 IPR044675 -
Bva10g01243 402 SUPERFAMILY RING/U-box 145 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01243 Bva-Chr10 8784946 8786623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01243 52 208 C3H Transcription Factor Family AT1G72220 46.835 1.77e-42 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01243 - - qsu:111986048 270.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01243 10 8784946 8786623 Bva10g01243 10 8784946 8786623 ECH