Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01241 ATGAAGAAAAACTATCGTCCCGCCCCCTTCCGGGGACAACCGAATTTGCATCGGAGAACTTACGCTCCTTGCAATTTCCCCGGTTCCGTTCATAATTCTCATAAATACCCTCAAACAGAGCATCTCAACTCGCCGGGACATAATTCCCCTCGCCGCTGTGCCAATTTCGTTGTCGAGCTCCGGTTTGGTTCCGGTGACTTCAGCAGGGAACGGGAACATGTGGAGTCCTTGGTCGCAGAATGCATGCCCAAGGCggatagtttttgtttttatccgAGTGATCGTGTTGCCGGTGCTTTGCATTTTAGTCAATGGGTCGATGCTCTCGACGCCATTGGCCGCTTATGGGAATCTCGGCTCAATGAAGTTCACAATTTTACCCCGGCGCTCACGTCCAATGTTCTCGTACCTTCCGACAAGCACGAGCTGGAGGACCGCCTTCGGTCCCTTTTTGTCGACCATGCTAAGAGCCTCATTGAAGGAAAGGAAGTAAAGATGTGGCTCGGGAAAATTGAGGTAATCTCGAGAGAAATTATGAAGATTAAGGGTTTGCTTGCGAGGCCCAAGGAAATTAGACTGTTGAAAGAACTCCGACAAAAGAAGCAGGGGCTTGATGCTGAGAAATTGCTGATTGAAAGGAGAGTAAAGGAGTTTCAGACAGCAATGAAGTGTATATTGTACTACATCGAGGAAAATAACTGGAAGGAAGCTGATGATGATGTTTTTCCAATACTTAAACTTGATGGAGGCAGGGATTGGAAGCGGGTTCTTAGCTTGATAAAAAGGGAGCAGCGCCGACTTGAGGATGGATTGCCCATTTATGCTTACCGGCGGGATATTCTTGAAGCAGTTCATGTTCAACAGATAATGGTATTAATTGGAGAGACTGGTTCAGGGAAGAGCACGCAGATGGTACAGTTTCTGGCTGATTCAGGCATTGGTGCAGACAAGTCCATCATATGTACCCAGCCTCGCAAGATTGCTGCCAAATCTTTGGCACATAGGGTCCAGGAAGAAAGTATCGGttgttacaaaaataattcaataaagttCTATTCAACATTGTCATCCTCTCGTGAATTTGATTCGAAGATAATATTCATGACCGACCACTGTTTACTGCAGCACTTCATGAGCGATAAGAATTTTTCTGGTATCTCATGCATCATAATTGATGAAGCTCATGAAAGGAGCCTAAATACAGATCTTCTATTGGCATTGATCAAGAGTTTACTGTGTAGAAGGTTTGAAATGAGGCTTATAATTATGTCTGCCACAGCTGATGCAAAGCAGCTATCTGACTACTTCTATGGTTGTGGGGTTTTTCATGTGGTTGGGAGAAACTTTCCCGTTGAGGTGAGGTATGTTCCATATGAATCTTCTGGACATTCTGGTTCTGCTGTTGTTGCTTCATATGCTTGTGACGTTGTGAGAATGGCGACTGAGATTCAcaaaacagagagagagggaaCTATTCTTGCCTTTTTAACATCTCAGGCAGAAGTGGAATGGGCTTGTGAAAAGTTTGCAGCTCCCTCTGCAGTTGCATTGCCCTTACATGGCAAACTTTCTTCTGAAGAGCAATTTCGTGTTTTCCATAACTACcctgggaaaagaaaagtgatatTTGCAACTAATCTTGCAGAAACGTCATTGACAATTCCTGGTGTCAAGTTTGTGGTTGATTCTGGGTTGGTTAAAGATAGTAGATTTGAACCTGGCAGTGGTATGAATGTTCTTAGAGTTTGCTGGACCAGTCAGAGCTCTGCTAATCAACGGGCTGGTCGTGCAGGGAGGACTGAGCCTGGCAGGTGCTATAGACTATACTCTGAATCTGATTATGAATCTATGGCGCCTAATCAAGAACCCGAGATTCGACGAGTTCATCTTGGGATAGCAGTTTTGAGGATCCTTGCCTTGGGAGTAAAGAATGTGCAGGATTTTGAGTTTGTGGATGCTCCAAGTCCCAGTGCTATTGATATGGCAATCAGGAATCTAATTCAGTTAAGAGCAATTAAACTAAGCGATGCTGTTTATGGATTAACTGATGAAGGTAGGTACCTGGTGAAAATGGGCATTGAGCCTAGGCTTGGTAAACTTATTCTTGGTTGTTTCAGAGTTAAGTTGGGTAGAGAAGGTCTTGTTCTTGCTGCTGTGATGGCCAATGCCAGTAGCATATTTTGCAGAGTTGGTAGTGATGATGATAAACAAAGATCTGATTGCCTTAAGGTGCAATTTTGCCATATCAATGGTgaccttttttctcttctctctgtgTACAAGGAATGGGAAGCATTGCCTCTAGAGCGGAAGAACAAATGGTGTTGGGAAAACAGCATCAATGCCAAATCCTTGAGGAGATGCAAAGACACAATTATGGAACTGGAACTTTGTCTTCAGCAAGAACTTAATTGTATTATTCCAAGTTACTGGCGGTGGGACCCTTATAAGTCCACTGATAATGATAAGCATCTGAAAATGGTTATACTGTCCTCACTTGCTGAAAATATTGCCATGTACTCTGGATGTGACCAACTTGGTTATCAAGTGGCGTCAACTGGGCAGCATGTTCAACTACATCCATCTTGTTCATTACTGGTATTTGCTCAGAAACCTAGTTGGGTTGTTTTTGGTGAGCTCCTTTCCATTTCCAATCAATATTTGGTCTGTGTCAGTGCCTTTGACTTTGAATCATTCTACTCCCTTTTCCCTCCTCCCTTGTACGATCTTTCTGAGATGGAAAGGAAGAAGTTGCAAATGAGGGTGCTGACCGGTTTTGGCAGAACTCTGCTCAAGAGGTTTTGTGGGAAAGCCAACAGTAATCTGCTCAGTCTCCAATCACGCATTCGAACAGCTTGTATGGATGAACGGATCTCCATTGAAGTCAATGTTGACCACAATGATATTCGATTATATGCGGCTTCACATGACATGGAAATGGCCCATGAGTTGGTCAATGATGTTCTAAAATACGAGAGAAAATGGTTGCATAGTGAGTGCACGGAGAAATGCCTCTATCAAGGTTCTGGTGTCTCACCTTCGATAGCTTTGTTTGGATCAGGAGCTGAGATAAAGCATTTAGAACTTGATAAGCGGTGCTTGAGTGTTGATGTATGTCATCCAAATATAAATGAAGTTGATGATAAGGAGCTTTTGATGTTTCTTGAGAAGAATACCTCAGGTAGTATCTGCGCCGTACACAAGTTTACAGGTACAGTGCATGATGTTGAAGATAGAGAGAAGTGGGGCAGAATAACTTTTCTCTCTCCTGATGCGGCCAAAAGAGCTGTTGAACTAGATGGGGAGGACTTTCATGGATCCTTGAAAATAGTTCCTTCACAGACAACCAATGTAGGGGATAAGACATTCTCATTTCCCGCTGTTAAAGCTAAAATTTATTGGCCTCGTAGGCCTAGCAAAGGATTTGGCATAGTAAAATGCAACATACAGGATGTTGATTTCATCTTGAGAGATTTTTGTGACCTTGCAATAGGAGGAAAGCATGTTCGATGTGAAGCTAGCAGAAGATCCCCGGATAGTGTGGCGATTAGTGGACTTGATAAAGAACTCTCTGAAGCTGAAATTTTAGATGTTCTGAGAGCTGCTACGAATAGGAGGATTCTGGATTTTTTCTTGGTGAGAGGAGAAGCTGTTGAGAATCCACCATGTTCTACTTGCGAAGAGGCACtcctaaaagaaatttgtccTATTATGCCAAAAATAAATCCCCACACTAATTCTTGTCGAGTTCAGGTATTATCGCCTGAGCCAAAGAATGCTTTCATGAGAGCTTTGATTACATTTGATGGAAGATTACATTTGGAGGCAGCAAAAGCTTTGGAGCAAATTGAAGGAAAGGTGTTATCTGGATGCTTGTCGTGGCAAAAGATAAAGTGTCAGCAGTTGTTTCATAGCTCCTTGACCTTCCCTATTCCTGTGTATCGTGTGATTAAGGAGCAACtggataaaatttttgcaagTTTCAGCTCTATGAATGgtCTTGAGTGGAACCTAGAAAAAACAGCCAATGGTTCCTATCGAGTGAAGATATCAGCCAATGCAACAAAGACAGTGGCAGAAGCTAGGAGACCTCTGGAAGAACTCACAAGAGGGAAAACTATTGACCACCACAGCGTCATTCCTACAGTTCTACAGCTCCTGTTGTCCAGAGATGGCATTATTCTTAAAACCTCAATACAGCAGGAGACAGGAACTTACATTCTTTTTGACAGGCAGAGCCTAACGTTACGCGTGATTGGTTCTCCAGAGAAGGTTTCTATGGCCGAGCAGAAGCTGATTGAATCCCTACTCTCTCTTTATGAGAGCAAGCAGCTAGAAATCCATCTTCGAGGGAGAGATCTGCCCTTTGACCTAATGAAGCAAGTGGTTAAGAACTTTGGGCCTGATCTTCGAGGACTAAAAGAGAAGGTACCCGAGGCAGCATTTACTCTCAACACACATCGtcaaataatcattttcatgATTGAGGAAGCATATCAGCTTGAAGGCTGTGGTCACTTGTTCTGCCGGTCATGTCTAGTGGAGCAATGTGAATCTGCTATAAGAAATCAAGGTAGTTTCCCAGTTTGTTGTGCTCACGAGGGCTGTGGGGATCCCATTCTACTTACAGACTTGAGATCTCTCCTGTTGAATGACAAGTTAGAGGAACTTTTCAGAGCTTCATTGGGAGCTTTTGTAACATCCAGTGGGGGCACTTACAGATTCTGCCCCTCCCCCGACTGCCCTTCAATTTATCGAGTTGCAAAACCCGGAACAGGTGGTGAGCCATTTGTTTGTGGAGCATGTTATGCAGAGACTTGTACAAAATGCCACTTAGAGTACCATCCCTATCTATCATGCGAGAGATACCGGGAGTTCAAGGAAGATCCAGACTCATCTTTGAAGGAATGGTGCAAAGGGAAAGAGCATGTTAAGAGCTGCCCCGCATGTGGGTATACAATAGAGAAGGGAGATGGGTGCAACCACGTTGAATGCAAGTGTGGGAATCATGCAGTTTA 5018 0.4243 MKKNYRPAPFRGQPNLHRRTYAPCNFPGSVHNSHKYPQTEHLNSPGHNSPRRCANFVVELRFGSGDFSREREHVESLVAECMPKADSFCFYPSDRVAGALHFSQWVDALDAIGRLWESRLNEVHNFTPALTSNVLVPSDKHELEDRLRSLFVDHAKSLIEGKEVKMWLGKIEVISREIMKIKGLLARPKEIRLLKELRQKKQGLDAEKLLIERRVKEFQTAMKCILYYIEENNWKEADDDVFPILKLDGGRDWKRVLSLIKREQRRLEDGLPIYAYRRDILEAVHVQQIMVLIGETGSGKSTQMVQFLADSGIGADKSIICTQPRKIAAKSLAHRVQEESIGCYKNNSIKFYSTLSSSREFDSKIIFMTDHCLLQHFMSDKNFSGISCIIIDEAHERSLNTDLLLALIKSLLCRRFEMRLIIMSATADAKQLSDYFYGCGVFHVVGRNFPVEVRYVPYESSGHSGSAVVASYACDVVRMATEIHKTEREGTILAFLTSQAEVEWACEKFAAPSAVALPLHGKLSSEEQFRVFHNYPGKRKVIFATNLAETSLTIPGVKFVVDSGLVKDSRFEPGSGMNVLRVCWTSQSSANQRAGRAGRTEPGRCYRLYSESDYESMAPNQEPEIRRVHLGIAVLRILALGVKNVQDFEFVDAPSPSAIDMAIRNLIQLRAIKLSDAVYGLTDEGRYLVKMGIEPRLGKLILGCFRVKLGREGLVLAAVMANASSIFCRVGSDDDKQRSDCLKVQFCHINGDLFSLLSVYKEWEALPLERKNKWCWENSINAKSLRRCKDTIMELELCLQQELNCIIPSYWRWDPYKSTDNDKHLKMVILSSLAENIAMYSGCDQLGYQVASTGQHVQLHPSCSLLVFAQKPSWVVFGELLSISNQYLVCVSAFDFESFYSLFPPPLYDLSEMERKKLQMRVLTGFGRTLLKRFCGKANSNLLSLQSRIRTACMDERISIEVNVDHNDIRLYAASHDMEMAHELVNDVLKYERKWLHSECTEKCLYQGSGVSPSIALFGSGAEIKHLELDKRCLSVDVCHPNINEVDDKELLMFLEKNTSGSICAVHKFTGTVHDVEDREKWGRITFLSPDAAKRAVELDGEDFHGSLKIVPSQTTNVGDKTFSFPAVKAKIYWPRRPSKGFGIVKCNIQDVDFILRDFCDLAIGGKHVRCEASRRSPDSVAISGLDKELSEAEILDVLRAATNRRILDFFLVRGEAVENPPCSTCEEALLKEICPIMPKINPHTNSCRVQVLSPEPKNAFMRALITFDGRLHLEAAKALEQIEGKVLSGCLSWQKIKCQQLFHSSLTFPIPVYRVIKEQLDKIFASFSSMNGLEWNLEKTANGSYRVKISANATKTVAEARRPLEELTRGKTIDHHSVIPTVLQLLLSRDGIILKTSIQQETGTYILFDRQSLTLRVIGSPEKVSMAEQKLIESLLSLYESKQLEIHLRGRDLPFDLMKQVVKNFGPDLRGLKEKVPEAAFTLNTHRQIIIFMIEEAYQLEGCGHLFCRSCLVEQCESAIRNQGSFPVCCAHEGCGDPILLTDLRSLLLNDKLEELFRASLGAFVTSSGGTYRFCPSPDCPSIYRVAKPGTGGEPFVCGACYAETCTKCHLEYHPYLSCERYREFKEDPDSSLKEWCKGKEHVKSCPACGYTIEKGDGCNHVECKCGNHAV 1672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01241 1672 Coils Coil 194 214 - -
Bva10g01241 1672 SUPERFAMILY RING/U-box 1642 1670 - -
Bva10g01241 1672 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 271 814 IPR027417 -
Bva10g01241 1672 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 387 396 IPR002464 -
Bva10g01241 1672 SUPERFAMILY RING/U-box 1571 1625 - -
Bva10g01241 1672 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 281 445 IPR014001 -
Bva10g01241 1672 Pfam IBR domain, a half RING-finger domain 1563 1620 IPR002867 -
Bva10g01241 1672 SMART ultradead3 269 454 IPR014001 -
Bva10g01241 1672 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 96 1482 - -
Bva10g01241 1672 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 1519 1613 - -
Bva10g01241 1672 SMART ha2_5 661 757 IPR007502 GO:0004386
Bva10g01241 1672 Gene3D - 254 447 IPR027417 -
Bva10g01241 1672 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1490 1564 IPR013083 -
Bva10g01241 1672 ProSiteProfiles TRIAD supradomain profile. 1485 1672 IPR044066 -
Bva10g01241 1672 CDD DEXHc_RHA-like 288 444 - -
Bva10g01241 1672 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 825 898 IPR011709 -
Bva10g01241 1672 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 475 641 IPR001650 -
Bva10g01241 1672 Gene3D - 1616 1671 - -
Bva10g01241 1672 CDD SF2_C_RHA 449 609 - -
Bva10g01241 1672 Pfam Helicase associated domain (HA2) 662 739 IPR007502 GO:0004386
Bva10g01241 1672 Gene3D - 448 621 IPR027417 -
Bva10g01241 1672 SUPERFAMILY RING/U-box 1497 1552 - -
Bva10g01241 1672 SMART helicmild6 503 601 IPR001650 -
Bva10g01241 1672 ProSitePatterns Zinc finger RING-type signature. 1504 1513 IPR017907 -
Bva10g01241 1672 Pfam DEAD/DEAH box helicase 284 432 IPR011545 GO:0003676|GO:0005524
Bva10g01241 1672 Pfam Helicase conserved C-terminal domain 483 600 IPR001650 -
Bva10g01241 1672 PANTHER ATP-DEPENDENT RNA HELICASE 96 1482 - -
Bva10g01241 1672 PANTHER ATP-DEPENDENT RNA HELICASE 1519 1613 - -
Bva10g01241 1672 Gene3D - 623 666 IPR042035 -
Bva10g01241 1672 SMART ibrneu5 1555 1620 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01241 Bva-Chr10 8774805 8781473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01241 1503 1669 C3H Transcription Factor Family AT2G31770 28.977 2.31e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01241 K12818 - gmx:100810008 2394.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01241 10 8774805 8781473 Bva10g01241 10 8774805 8781473 ECH