Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01239 ATGAAGAGATCACTTGGCAGCTCAGAAGATTCTTTGGGTGCTCTCATCACTATCTGTCCAACCACAGGCGAACAAAGTCCGAGGAACAACCATGTCTATGGTAGGGAGTTCCAATCCATGTTGGACGGCCTAGATGAAGAAGGCTGCGTTGAAGAATCAGGCCACGGCTCTGAGAAGAAACGGAGGCTTAGTGTTGATCAAGTTAAGGCTTTGGAGAAGAACTTCGAGGTAGAGAATAAGCTTGAACCTGAGAGGAAGGTGAAGCTTGCCCAAGAGCTTGGATTGCAGCCAAGACAAGTTGCCGTTTGGTTCCAAAACCGGCGAGCTAGATGGAAAACCAAGCAGCTCGAGAGAGATTATGGCGTTCTCAAAGCCAATCATGAAGCTCTGAAACTCAACTTTGACTCTCTGCAACGTGACAATGAAGCTCTACGCAAGGAGATTAAGGAATTGAAATCAAGAGTTCAAGAAGATAACACCGAAAGCGATGTTTCAGTGAAGGAAGAGATAAATCAGCTGCCGGATTCCGACGAGAAAATGATCGAACGGAGTATTGAAACCTCCATTCCTGGATCAGAGTGCAACAAGGATTTGAATTACGATTGCttcaacagcagcagcaatcAAATGGGAGCTGCCACACTCTTCTCAGTAGATGTCAAAGACGGCTCTTCCGACAGCGACTCTAGTGCAATCCTAAACGAGGATAACAGCTCGAACGCCGCCATTTCTTCGTCTGGGGTGTTTCAGAATCACCAGATGTTGATGTCGTCTCCACCTGGCTCGTCTTCTCTCAAGTTCAATTGCTCTCCATCTTCATCGCCCTCGTCCATGAACTGCTTCCAATTCCAGAAAACATACCCAACGCAATACGTGAAGACGGAAGAGCACAACTTCTTCAGCGCCGACGAGGCCTGCAATTTCTTCTCCGATGAGCAAGCACCAACCCTCCCATGGTACTGCTCCGACCAATGGAgcta 980 0.4673 MKRSLGSSEDSLGALITICPTTGEQSPRNNHVYGREFQSMLDGLDEEGCVEESGHGSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANHEALKLNFDSLQRDNEALRKEIKELKSRVQEDNTESDVSVKEEINQLPDSDEKMIERSIETSIPGSECNKDLNYDCFNSSSNQMGAATLFSVDVKDGSSDSDSSAILNEDNSSNAAISSSGVFQNHQMLMSSPPGSSSLKFNCSPSSSPSSMNCFQFQKTYPTQYVKTEEHNFFSADEACNFFSDEQAPTLPWYCSDQWS 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01239 326 Gene3D - 54 121 - -
Bva10g01239 326 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 318 IPR045224 GO:0003700
Bva10g01239 326 SUPERFAMILY Homeodomain-like 43 116 IPR009057 -
Bva10g01239 326 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 318 - -
Bva10g01239 326 CDD homeodomain 59 115 IPR001356 GO:0003677
Bva10g01239 326 ProSiteProfiles 'Homeobox' domain profile. 54 114 IPR001356 GO:0003677
Bva10g01239 326 ProSitePatterns 'Homeobox' domain signature. 89 112 IPR017970 GO:0000981|GO:0006355
Bva10g01239 326 Coils Coil 127 161 - -
Bva10g01239 326 Pfam Homeodomain 59 112 IPR001356 GO:0003677
Bva10g01239 326 Pfam Homeobox associated leucine zipper 114 156 IPR003106 GO:0006355|GO:0043565
Bva10g01239 326 SMART HOX_1 57 118 IPR001356 GO:0003677
Bva10g01239 326 PRINTS Lambda-repressor HTH signature 94 110 IPR000047 GO:0003677
Bva10g01239 326 PRINTS Lambda-repressor HTH signature 85 94 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01239 Bva-Chr10 8756047 8758391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01239 1 325 Homeobox Transcription Factor Family AT2G22430 49.284 6.74e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bva10g01239 Homeodomain 2.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01239 K09338 - qsu:112039557 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01239 10 8756047 8758391 Bva10g01239 10 8756047 8758391 ECH