Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01229 atggaGGAGGAAGAACACGAGGTCTACGGAGGCGAGATCCCAGACGTGGGAGAGATGGAAGGAGACATGGATTCTCACCATGCAGATGTCGACATGTCTGCTGGCGACGATGATGCAGTCAAGGAGCTTGACGAGATGAAGAAGAGACTGAAGGAGATGGAAGAGGAAGCTGCAGCTCTCCGTGAAATGCAGGCCAAGGTGGAAAAGGAAATGGGTGCAGTTCAAgATCCTGCCAGTGCGGCTGCTTCTCAGGCAAGCAGGGAGGAGGCAGATGCTCGATCTGTTTTTGTTGGCAATGGTCATTCTTATTACTCAAGCTCTATAATTAGCGCTGGGATGCATACATTGTATTTTGTGGTACACTGGGAGGCAGCTTGTGATTCTTTGAAAGAGCATTCTGTTGATTATGCATGCACCCCAGAAGAAGTACAGCAACACTTCCAATCATGTGGTACGGTGAACAGGGTCACCATACTTACAGACAAGTTTGGCCAGCCTAAAGGTTTTGCGTATGTGGAATTTGTAGAAGCTGAAGCTGTTCAAGAGGCTATCCTCCTGAATGAATCTGAATTACATGGCCGTCAACTGAAGGTTTTGCCTAAGAGGACTAATGTTCCTGGAATGAAACAGTATCGTCCTAGACGTTTCAATCCTTACACGGCTTTCCGTAGGAGGCCGTATACTCCTCCGTACTTCTACTCTCCATATGGATATGGGAAGGTTCCAAGATTTAGAAGGCCATCACGCTACATGCCTTACTATTA 764 0.4699 MEEEEHEVYGGEIPDVGEMEGDMDSHHADVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPASAAASQASREEADARSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAVQEAILLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYTAFRRRPYTPPYFYSPYGYGKVPRFRRPSRYMPYY 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01229 220 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 163 IPR000504 GO:0003723
Bva10g01229 220 SMART rrm1_1 94 165 IPR000504 GO:0003723
Bva10g01229 220 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 169 IPR000504 GO:0003723
Bva10g01229 220 SUPERFAMILY RNA-binding domain, RBD 84 193 IPR035979 GO:0003676
Bva10g01229 220 MobiDBLite consensus disorder prediction 1 36 - -
Bva10g01229 220 MobiDBLite consensus disorder prediction 69 89 - -
Bva10g01229 220 Gene3D - 31 165 IPR012677 -
Bva10g01229 220 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 1 218 - -
Bva10g01229 220 CDD RRM_II_PABPs 94 165 - -
Bva10g01229 220 PANTHER - 1 218 - -
Bva10g01229 220 Coils Coil 36 70 - -
Bva10g01229 220 MobiDBLite consensus disorder prediction 19 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01229 Bva-Chr10 8692426 8696529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01229 90 164 Eukaryotic Initiation Factors Gene Family AT2G36660 34.211 1.39e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01229 K14396 - cpap:110814431 357.451