Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01223 ATGAACTTCATACTTGTGCTATTGCTGTTGGCCTGCTTACATTCTTTCGTCTTGGCTGATCCACAAGGAGATGCGCTATATGCTTTGATGACTTCATTGAATGCTTCATCCAAGCTTACTGACTGGAATCCAAACCAAGTTAATCCTTGTACTTGGTCTCATGTTAGCTGTGACCCAAATAACAGAGTTTTTTCAGTTTCATTAGCGCTGATGGGATTTACAGGAACTTTGACTACCAAAATAGGAGCACTAAAAAGTCTTACAACTCTTTCTTTGCAAGGGAATCATATCACTGGTGGCATACCAAAGGAATTAGGAAACCTTACAAGTCTCGTCAGGTTGGATTTGGAAAACAACAGCTTAATTGGTGAAATACCATCTTCCCTTGGAAATCTTAAAAACCTTCAATTCTTGACTTTAAGTCAAAACAACCTCAATGGAACTATTCCTCAGTCACTTGCTAGTCTACCAAGCTTGATCAATGTTCTGCTGGATTCAAATGATCTCAGTGGTCAAATTCCCGATCAGTTGTTCAAAGTTCCTAAATATAATTTCACAGGAAACAATTTGAATTGTGGCATAAATTATAGTCATCCGTGTGAATCTGATACAGATCAAGATTCTTCACGTAAATCAAAAGTTGCCCTTATAGTTGGAATTACTGTAGGgctagttttcatttttctactATGTGGTCTGCTGTTCTTTTGGTGTAAGGGCAGGCATAAGGGCTATAGGCGTGAAGTTTTTGTGGATGTTGCAGGTGAAGTTGATCGGCGAATTGCATTTGGTCAACTAAAAAGATTTGCATGGAGAGAACTACAGATAGCCACAGACAACTTCAGTGAGAAAAATGTCTTAGGACAGGGAGGCTTTGGAAAAGTCTATAAAGGTGTTCTTGCAGATAACACTAAAGTTGCTGTTAAAAGGTTAACTGATTATGAAAGTCCAGGGGGAGATGCAGCTTTCCAGAGGGAGGTTGAGATGATAAGTGTTGCTGTTCATAGAAATCTGTTACGGTTGATTGGGTTCTGCACTACTCCAACTGAGCGTCTCTTAGTTTATCCCTTCATGCAGAACTTAAGTGTTGCCTATCGTCTAAGAGAACTTAAACCTGGGGAACCTGTTTTAGATTGGCCTACAAGAGAACGTGTGGCTCTAGGCACATCCCGTGGCCTAGAATATCTTCACGAGCATTGCAATCCTAAGATTATTCACCGGGATGTGAAGGCAGCTAATGTATTATTAGATGAGGGTTTCGAGGCAGTTGTTGGTGACTTTGGTTTGGCAAAGTTAGTTGATGTTAGAAAGACTAATGTGACAACTCAAGTTAGGGGAACAATGGGCCACATAGCTCCTGAATACTTGTCCACAGGGAAATCTTCAGAAAGGACTGATGTTTTTGGTTATGGGATAATGCTGTTGGAACTTGTTACAGGTCAACGGGCAATTGACTTTTCACGTTTGGAAGAGGAAGATGATGTGTTGCTGCTTGACCATGTTAAGAAACTCGAACGGGAAAAAAGACTAGGTGATATAGTAGACCACaacctaaataaaaattacaacataCAAGAGGTTGAAATGATGATACAAGTTGCATTGCTCTGCACGCAAGCATCACCGGAGGACCGTCCAGCAATGTCAGAGGTGGTGAGAATGCTCGAAGGGGAAGGGCTGGCGGAAAGGTGGGAAGAATGGCAACATGTGGAGGTTACTCGGAGGCAAGAATACGAGAGACTACAAAGAAGATTTGACTGGGGAGAAGATTCAGTTTATAACCAAGATGCCATCGAGTTGTCTGGTGGGAGATG 1814 0.4079 MNFILVLLLLACLHSFVLADPQGDALYALMTSLNASSKLTDWNPNQVNPCTWSHVSCDPNNRVFSVSLALMGFTGTLTTKIGALKSLTTLSLQGNHITGGIPKELGNLTSLVRLDLENNSLIGEIPSSLGNLKNLQFLTLSQNNLNGTIPQSLASLPSLINVLLDSNDLSGQIPDQLFKVPKYNFTGNNLNCGINYSHPCESDTDQDSSRKSKVALIVGITVGLVFIFLLCGLLFFWCKGRHKGYRREVFVDVAGEVDRRIAFGQLKRFAWRELQIATDNFSEKNVLGQGGFGKVYKGVLADNTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAYRLRELKPGEPVLDWPTRERVALGTSRGLEYLHEHCNPKIIHRDVKAANVLLDEGFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLGDIVDHNLNKNYNIQEVEMMIQVALLCTQASPEDRPAMSEVVRMLEGEGLAERWEEWQHVEVTRRQEYERLQRRFDWGEDSVYNQDAIELSGGR 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01223 604 ProSiteProfiles Protein kinase domain profile. 281 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva10g01223 604 Pfam Protein kinase domain 282 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva10g01223 604 SMART serkin_6 281 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva10g01223 604 SUPERFAMILY Protein kinase-like (PK-like) 261 556 IPR011009 -
Bva10g01223 604 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 5 604 - -
Bva10g01223 604 ProSitePatterns Protein kinases ATP-binding region signature. 287 309 IPR017441 GO:0005524
Bva10g01223 604 Pfam Leucine rich repeat N-terminal domain 19 58 IPR013210 -
Bva10g01223 604 Gene3D Transferase(Phosphotransferase) domain 1 358 575 - -
Bva10g01223 604 Pfam Leucine Rich repeats (2 copies) 85 126 IPR025875 -
Bva10g01223 604 SUPERFAMILY L domain-like 37 191 - -
Bva10g01223 604 Gene3D Ribonuclease Inhibitor 21 201 IPR032675 -
Bva10g01223 604 Gene3D Phosphorylase Kinase; domain 1 250 357 - -
Bva10g01223 604 PANTHER LRR RECEPTOR-LIKE KINASE 5 604 - -
Bva10g01223 604 ProSitePatterns Serine/Threonine protein kinases active-site signature. 404 416 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01223 Bva-Chr10 8659827 8666362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01223 1 604 Receptor kinase-like Gene Family AT5G10290 77.190 0.0 924
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Bva10g01223 Pkinase 7.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01223 - - gmx:100793416 1049.65