Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01221 ATGAATACGCAAAATTCGAACGGAATTTCCCAAATCCCGTCGGGACATGCCGTGACCCGAATATCCCATGGGCAAGATCCGAATGGGAGCGCGGACCCTCTGGTTCCCCTCCGGAATCTGCTCGTGGTCAGAACGAGAATGGATTCGCTGCAAGGCTTCCTATCCGAATCCATCAACAGTCGCACTCTGGTCAGCAAGGATCAGATGGAAATGGTCTCCAACGAGATCGTCTCCGCCATCCACCAGATAATCGTCAACGGCACCGCTCTCGTGTCTGCCGGAGCCTCCATGAAATTACTCGATTCGTCGGATGTGGTCTCTTGTAAGAAGCCGCGGTTGGATTCTTCAAGTAAACAGGGGTTCGATTTGAAAGTTGAAGTCTTGGACGACGAGGACGCTGAAGATTGTGAGGATGATTGTGAAATTGTGGAGCTTGACGCCATGGAATTGCTCATGGAGCACATTCATTTCTGTGAAATATGCGGGAAAGGATTCAGACGTGATGCCAATTTGCGAATGCACATGCGCTCTCACGGAAATCAATTCAAGACCCCGGAAGCGTTGGCGAAACCCTCAGATAAACTCGAGGGCACGCGCCGTAGAGCGACGCGGTTTTCTTGCCCATTCGAAGGTTGCAACCGGAACAAGTCCCACAAGAAATTCCGGCCATTAAAGTCGATTATTTGCGTGAAGAACCATTTCAAAAGAAGCCATTGCCCAAAAATGTATTCATGTAATCGGTGCCACAAGAAGAATTTCTCTGTACTCTCGGATTTGAAGAGCCATCAGAAGCATTGCGGAGAATCCCGGTGGAAGTGCTCGTGTGGAACCACCTTTTCCCGGAAAGATAAACTATTTGGGCACATAGCGTTGTTTGAAGGGCACATGCCAGCGCTTGCGCcggatgaagaagagaaaggaaagccaGTGGAAGTGGTGGCCATGGTAGATGACGAAAGGGACAGAATGCTGAAAGAAGATGTAGGAGTTAATCATTTCGATGATGGGTTACCGGATGGATTCTTCGACGATTTAGATGCTTTTGGGTCAATTGAGAACTACTGTTTACAACGAGATGCTTTCCATTCTTA 1091 0.4757 MNTQNSNGISQIPSGHAVTRISHGQDPNGSADPLVPLRNLLVVRTRMDSLQGFLSESINSRTLVSKDQMEMVSNEIVSAIHQIIVNGTALVSAGASMKLLDSSDVVSCKKPRLDSSSKQGFDLKVEVLDDEDAEDCEDDCEIVELDAMELLMEHIHFCEICGKGFRRDANLRMHMRSHGNQFKTPEALAKPSDKLEGTRRRATRFSCPFEGCNRNKSHKKFRPLKSIICVKNHFKRSHCPKMYSCNRCHKKNFSVLSDLKSHQKHCGESRWKCSCGTTFSRKDKLFGHIALFEGHMPALAPDEEEKGKPVEVVAMVDDERDRMLKEDVGVNHFDDGLPDGFFDDLDAFGSIENYCLQRDAFHS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01221 363 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 1 357 - -
Bva10g01221 363 ProSiteProfiles Zinc finger C2H2 type domain profile. 156 183 IPR013087 -
Bva10g01221 363 Gene3D Classic Zinc Finger 230 298 - -
Bva10g01221 363 Gene3D Classic Zinc Finger 156 180 - -
Bva10g01221 363 SMART c2h2final6 156 178 IPR013087 -
Bva10g01221 363 SMART c2h2final6 205 238 IPR013087 -
Bva10g01221 363 SMART c2h2final6 243 265 IPR013087 -
Bva10g01221 363 ProSitePatterns Zinc finger C2H2 type domain signature. 158 178 IPR013087 -
Bva10g01221 363 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 357 IPR044300 GO:0010044|GO:0010447
Bva10g01221 363 SUPERFAMILY beta-beta-alpha zinc fingers 153 179 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01221 Bva-Chr10 8645085 8646460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01221 129 306 C2H2 Transcription Factor Family AT1G34370 60.870 2.63e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva10g01221 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01221 - - gmx:100796506 392.504