Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01170 ATGACGGCTATCGCTCAGCTTTTCTCTCAGCTTTACACCAAAACCATGGTCCTTCTCGCTATCCTTCTACTAGAACTCGTGCTTCTAATTCGATACTTCAAGTCAGATGCGCAGACAATCACTCCAACCCAATACCTCAAACTAATCGAAGAGAAGAACCCGACAATTCGCTTTACCAGAAGATTGAAGCCACCGGAGAACACAGATCAGTGCCGGGTTTGCTTGTCGGAGTTCGAGGAAGGCGAGAAAGTTAGAAACTTGAAATGCAAACACACATTTCACAAGGATTGCTTGGACAAATGGCTGCAGCAATGTTTGGCTACTTGCCCTCTCTGCAGAAACAAAGTGCTGCCGGATAAAGTAGTGGCCAGGTACCGCCGGCTTCAAAATCAGGTAGAAAATGATGGGAATCATGACCAGATTATGATCCTAGTATCCGCTTTACGTGGAGAAAATCAGATCAGTTA 467 0.454 MTAIAQLFSQLYTKTMVLLAILLLELVLLIRYFKSDAQTITPTQYLKLIEEKNPTIRFTRRLKPPENTDQCRVCLSEFEEGEKVRNLKCKHTFHKDCLDKWLQQCLATCPLCRNKVLPDKVVARYRRLQNQVENDGNHDQIMILVSALRGENQIS 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01170 155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 118 IPR013083 -
Bva10g01170 155 SMART ring_2 71 112 IPR001841 -
Bva10g01170 155 PANTHER - 1 152 - -
Bva10g01170 155 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Bva10g01170 155 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 152 - -
Bva10g01170 155 CDD mRING-H2-C3H2C2D_ZSWM2 70 113 - -
Bva10g01170 155 Pfam Ring finger domain 69 113 IPR001841 -
Bva10g01170 155 SUPERFAMILY RING/U-box 70 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01170 Bva-Chr10 8317719 8318347 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01170 12 119 C3H Transcription Factor Family AT4G00305 32.500 1.63e-17 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01170 K16282 - gmx:102669811 205.682
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01170 10 8317719 8318347 Bva10g01170 10 8317719 8318347 ECH