Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01169 ATGATAGGTTTCTCTGAGCTTTTCTCTCAGCTTTACACCAAGATCGTGGTCTTTCTCACTCTCCGTCTATTAAAACTTGTGCTTCTCATTGGACACTTGATGTCAGATACACAGACAAACACTACCACCCAATTCCTCAAACTCATCGAAGAGAGAAACCCAACAATTTGCTTCACCAGAAGATTGAAGCCGCCGGACAACATAGATCAGTGCAGGGTTTGCTTGTCGGAGTTCGAGGAAGGCGAGAAAGTTAGAAACTTGAAATGCAAGCACACATTTCACAAGGATTGCTTGGACAAATGGCTGCAGCAATGTTTGGCCACTTGCCCTCTCTGCAGAAACCAAGTGCTGCCTGATAATGTTGTCGACAAGTATCGCCGGCTTCGAAATCAGGTAGAAAACGATCAGAACGAAGACCAGATTATGACTGACTATGTTATCTGCTTTACGTCACTACTAGAAAATTGTCTTATAACTGCGAATTTTGCTTA 491 0.4318 MIGFSELFSQLYTKIVVFLTLRLLKLVLLIGHLMSDTQTNTTTQFLKLIEERNPTICFTRRLKPPDNIDQCRVCLSEFEEGEKVRNLKCKHTFHKDCLDKWLQQCLATCPLCRNQVLPDNVVDKYRRLRNQVENDQNEDQIMTDYVICFTSLLENCLITANFA 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01169 163 SMART ring_2 71 112 IPR001841 -
Bva10g01169 163 PANTHER - 2 144 - -
Bva10g01169 163 SUPERFAMILY RING/U-box 70 119 - -
Bva10g01169 163 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Bva10g01169 163 CDD mRING-H2-C3H2C2D_ZSWM2 70 113 - -
Bva10g01169 163 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 2 144 - -
Bva10g01169 163 Pfam Ring finger domain 69 113 IPR001841 -
Bva10g01169 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 120 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01169 Bva-Chr10 8314753 8315244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01169 71 127 C3H Transcription Factor Family AT1G15100 54.386 1.91e-17 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01169 K16282 - gmx:102669811 174.481