Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01157 ATGACAGGGAAGAGAAACCAAACAAGTCCCATTGGAAGCCCAGAAAGTAGTTCAAAAGAACTAGACCGGTTCCTTCCAATAGCCAACGTTAGCCGAATCATGAAAAGGGCACTCCCGGCCAATGCCAAAATCTCCAAGGAAGCCAAGGAAACTGTTCAAGAGTGTGTCTCTGAGTTCATAAGCTTCATCACCGGCGAAGCTTCAGACAAGTGccagagagagaagaggaagacCATCAACGGCGACGACCTTCTTTGGGCCATGACAACGTTGGGGTTCGAGAACTACGTTGGACCTCTGAAGGTTTACCTCAACAACTACAGAGAAACAGAAGGAGAAAAGGGTAATTCCATGGCTAGACCAGAAGATCACTGTCCCACAGAATTAGCCAACGATGGGTTCGTTGAAATTAATGATTCTCTGCCAAACAAGGCATATTCAATACCCAGTTTCAATGGTGGTTTCTGCTCTGTTGGCGTTGGGTCACAGCTAAATCTGAAAAGCTTCACGGAGATCGGAGGGATCAGTGGTTTCAGAGAGAACTCCGTCAACGGTGATGATGCAAACGGGAATACGAGGTTGCCGGCCAATCTACGTTACAGTTTTGAATGGCAGAAATCGTA 623 0.4526 MTGKRNQTSPIGSPESSSKELDRFLPIANVSRIMKRALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKVYLNNYRETEGEKGNSMARPEDHCPTELANDGFVEINDSLPNKAYSIPSFNGGFCSVGVGSQLNLKSFTEIGGISGFRENSVNGDDANGNTRLPANLRYSFEWQKS 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01157 207 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Bva10g01157 207 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Bva10g01157 207 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Bva10g01157 207 MobiDBLite consensus disorder prediction 1 20 - -
Bva10g01157 207 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
Bva10g01157 207 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11 4 163 - -
Bva10g01157 207 MobiDBLite consensus disorder prediction 1 16 - -
Bva10g01157 207 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Bva10g01157 207 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 163 IPR027113 GO:0001228|GO:0006355|GO:0016602
Bva10g01157 207 SUPERFAMILY Histone-fold 22 123 IPR009072 GO:0046982
Bva10g01157 207 Gene3D Histone, subunit A 13 132 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01157 Bva-Chr10 8244632 8245559 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01157 16 123 CCAAT-HAP3 Transcription Factor Family AT4G14540 83.333 9.72e-63 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Bva10g01157 CBFD_NFYB_HMF 1.1e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01157 K08065 - gmx:100810059 273.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01157 10 8244632 8245559 Bva10g01157 10 8244632 8245559 ECH