Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01145 ATGTCGTCGACGCTGCTGGAGGTGACTCGGGGAGCACACGAGGAGGTGGAGCGGCTCGAGCGGCTGATAGTGAAGGACCTCCAGAATGAGCCGGCCACCTACAAGGACCGCTTGTATCAGAGTCACCGTGTTCGTAACATGATTGATACTATTATCTCTACCACTGAAAAAATCGTTGAAATATACGAAGATAAAGACAGTGCGAGGAAGGATGAAATTGCTGCACTAGGAGGTCAAACTGCAACTGGAACAAATGTATTTAGTGCCTTTTATGATAGATTGAAAGAGATACGAGAGTATCATAGAAAGCACCCAGCTGCACGTGTTGTGGATGATAGTGATGAGTCTGAAGCACTACTTAAGGAGGAACCTCTAATTGAATTTAGTGGAGAGgAAGCTTCCGGTCGATACTTAGACTTGCATGAATTGTACCATCAGTTTATCAATGCCAAATTTGGAGAGCCAATTGAGTACTCTGCTTATCTTGATGTTTTCTCGCAAACAGATAAGATTCCGCGcaaaatgaagatgataaGGCAGTACAGGGAGTATATGGAGAGTCTTGTGGAGTATCAAATTTACTTCTTTCAGCGGACTGAACCCTTGCAAGATCTTGATCGTATTTTCTCAAagGTGGTTTCTGAGTTTGAAGAAGATTGGGCAACAGGCAAGGTACCAGGATGGGAGAACGACATCCAAGAGAATGGACATGTGCCTGCTCTAATAGATCTTGATTATTACAGTACAGTTGAAGAGCTGATCGAAGTTGGTCCCGAAAAGTTAAAGGAGGCACTGGCCGCATTGGGACTCAAGACTGGAGGTACTGTTCAACAACGTGCTGAGCGGTTGTTCCTTACAAAGCATACACCTCTTGAGATGTTGGACAAGAAGCATTTTGCTAAGGGGCTGCGAGGTTCAGATAAAAATGGGCCTCCTGCAGGTCCGCAACAagatgaaaattcaaaagaaattgctCTGATGGAGGCCAAAATGAGAAGACTATGTGATTTGTTGGCCGATGTAATTGCGAAAACAAAAGACAATGTTGTGAAGAAGCAAGCCCTGACGTATGAGGAACTTGAAGCAGAACGTGGAGAGGAAGAGATACAAGAGGACACCGAGAGTGAAGATGAGGAGCAGCAGATATATAATCCCCTAAAATTGCCAATGGGATGGGATGGAAAGCCTATTCCTTATTGGCTGTATAAGCTACATGGTCTTGGTCAGGAATTCAAATGTGAGATATGTGGCAACTACAGTTATTGGGGTCGCAGAGCTTTTGAACGGCATTTTAAAGAATGGCGCCATCAACATGGTATGCGCTGCCTTGGTATACCAAATACTAAGAACTTCAATGAAATTACATCGATTGAGGAAGCAAAAGAACTGTGgaagaaaatacaagaaagACAAGGACTAAACAAGTGGCGCCCAGATctagaagaagaatatgaagACAAAGAAGGCAACATATACAACAAGAAGACTTACTCTGATCTACAACGCCAAGGTTtgatatg 1520 0.4178 MSSTLLEVTRGAHEEVERLERLIVKDLQNEPATYKDRLYQSHRVRNMIDTIISTTEKIVEIYEDKDSARKDEIAALGGQTATGTNVFSAFYDRLKEIREYHRKHPAARVVDDSDESEALLKEEPLIEFSGEEASGRYLDLHELYHQFINAKFGEPIEYSAYLDVFSQTDKIPRKMKMIRQYREYMESLVEYQIYFFQRTEPLQDLDRIFSKVVSEFEEDWATGKVPGWENDIQENGHVPALIDLDYYSTVEELIEVGPEKLKEALAALGLKTGGTVQQRAERLFLTKHTPLEMLDKKHFAKGLRGSDKNGPPAGPQQDENSKEIALMEAKMRRLCDLLADVIAKTKDNVVKKQALTYEELEAERGEEEIQEDTESEDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQERQGLNKWRPDLEEEYEDKEGNIYNKKTYSDLQRQGLI 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01145 506 Coils Coil 350 377 - -
Bva10g01145 506 PANTHER BNAA03G01920D PROTEIN 1 506 - -
Bva10g01145 506 PANTHER SPLICING FACTOR SF3A-RELATED 1 506 - -
Bva10g01145 506 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 127 176 IPR031774 -
Bva10g01145 506 Pfam Replication stress response SDE2 C-terminal 223 301 - -
Bva10g01145 506 Pfam Splicing factor SF3a60 binding domain 80 105 IPR021966 -
Bva10g01145 506 Pfam SF3a60/Prp9 C-terminal 387 506 IPR024598 GO:0000398|GO:0003723|GO:0005681
Bva10g01145 506 ProSiteProfiles Zinc finger matrin-type profile. 411 442 IPR000690 GO:0003676|GO:0005634|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01145 Bva-Chr10 8194976 8201022 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01145 1 506 C2H2 Transcription Factor Family AT5G06160 74.506 0.0 753
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01145 K12827 - gmx:100815393 862.062