Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01116 ATGGAATTCGACGAGTACGATTACTTAGAGAAGACTGTGGAGGAGACGGAAGACCGAGATTCatcgaagaagaagaaggagagcAGTGACAAGAGTGAGAGGAGCTACAGGAAGCGTGAGGTCGACGAGGATCTGGATGGTGAAGACAGGAAGAGCAAGAGGTCCAGGGGCGACGATGAGAATGGAACAAAGAAGGATCGTGATGACCGCGACAGGGAACGGTCTAGTCGTGAAAAGGAGCGGCATAGGAGTGGTAGGGAGAGAGACGAAGAAAGAGAGCGAGAGAGAAGTAGTAAGGAGAAGGGGAGAGACAGGgatagagatagagataggGAGAAGGATagggagaaagagagggaTAAGGATAGGGAGAGGgatagagaaagaagggaTAAAGAGAGGGAGcgggagaaagaaagagagagggagaggagAGAAAGGGACACGGAGAGGGAAAGAGAACGGGAGAGAAGGGAGAGGGAaaaggaggagagagagaggtcCAGGAGAAGCAGAAGTCGTTCCGATCGAGATAGAGACCGAGAGCGAGAATTAGACTTGAGAGACAGCAGGAGATTTAGGGACAAGAAAGAGGCTGTGGAGCCTGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCATACCAGATGCCCCTAAAGGCAACAGAGAGAGATGCTTATGAGTTCTTCTCAAAAGCTGGCAAGGTGAGGGATGTGCGTCTGATCATGGATAGGAACTCAAGACGTTCAAAAGGAGTTGGCATTGCGATAATGATGAGGGATGATGGGAATACCTTGCACTCATGTTTAATCAATTCATGCTGCGTACTCAAGGgactttctccttttcttctcatcGTTCTTCTTTTTGGAGGAGATACATCAAAAGAAACTCAGCTTGAGCTGTCTGCACTAGAGTTTTTGTTTCCCTTCATCTCTTTGCTGTATGATTTgtatattgaattttttgacgCAATGTCTGTGCCAATGGCAATTGCTCTCTCCGGCCAACTGCTTCTTGGACAGCCTGTAATGGTTAAACCTTCTGAGGCTGAGAAGAACCTTGTCCAATCTAATGCTTCCAGTGGAGGTGCTGGTGTTACTGGACCATATGGAGCAGTTGATAGAAAACTATATGTGGGGAATCTTCACTTCAACATGACTGAAAGTCAGTTGAGAGAGATTTTTGAGCCATTCGGTCCAGTGGAGCTTGTGCAACTGCCTCTTGACCTGGAGACAGGACACTGCAagggttttggttttgttcaaTTTGCTCAACTCGAACACGCCAAGGCAGCACAGAGTTTGAATGGAAAATTAGAGATTGCTGGCCGAACAATCAAGGTTTCGTCTGTAACAGATCATGTCGGAACCCAGGATGCAACTGCTAAATCTGCAGactttgatgatgatgaaggtGGATTGGCTTTAAATGCCCAATCAAGAGCATTACTTATGCAAAAGCTGGATCGTACTGGTATTGCCTCAAGCATTGCAGGGTCTATTGGGGTACCCATTTCAAATGGGTCAGCTCCTGCTCAACAGGCTGTTAGCTTGCCTTTTGGTGGTCCGGGTCTAATATCTGCACCTGCTCTCCCAACGCAAATTATGCCTACTCCAGTGGCAGAACCAGTAGGAACCCCCAGCGAGTGTTTACTCTTGAAGAATATGTTTGATCCAGCGACTGAGACCGATCCAGATTTTGATGTAGACATTAAAGAGGATGTAGAGGAAGAATGCTCCAAGTTTGGCCGGGTGAAGCATATTTATGTTGACAAAAGAAGTGCTGGTTTTGTctatttgaagtttgaaacaGTGGAAGCTGCAAGTGCTGCTCAACGTTCAATGCACATGAGATGGTTTGCACGCAGGTTAATCTCAGCTGTCTACGTGcAACCGCAGAAGCCGAAGCCATATCCCCACGCTGACAAGAGCAAAGAGAGTCTGAGAGAGAGGGACAGAGGGAGCGACCGACTGAGTGGTAGCCAAGCTTCAAAAGTTCGCTCCCAACTTGCTCAGACAACTACACTCAGAACACAACACAACCCAACGATGGATAGGTATCAGAGGGTGGAGAAACCAAAGGCAGAGACTCCTATAAACGAGAACGAAATACGCATTACCAGCCAGGGCCGGATGAGGAATTATATTACCTATGCCACCACTCTCCTCCAGGAGAAAGGATCTGATGAAATTGTTCTTAAGGCTATGGGCAGAGCTATCAATAAGACAGTAATGATTGCTGAACTGATCAAGAGAAGGATTGTTGGTTTGCATCAGAACGCTTCAATTGGATCAATTGATATAACTGACACGTGGGAGCCACTAGAAGAAGGCCTTCTACCTTTGGAGACAACACGCCATGTTTCAGTTATCACCATTACTTTGTCAAAGAAAGAGCTGGATACATCCTCCACTGGATACCAACCTCCGCTTCCAGCTGATCAAGTAAAACCTTTAAATGAATACGAAGAGGATGGAGATGGCTCACCGAGGATGCGAGGAAGGGGACGCGGTCGCCGTGGAAGGGGCAGGGGTAGAGGATATTACAACATGGTTATGGAATATAACGGAGATGGTTGGGATGGTGGACGTGGCTATGGTGGTAGAGGAGGACGTGGCGGTGCAAGGGGTCGTGCTTCTCGAGGGCGAGGACGAAACTATGGTGTTGGTTACTATGACTATGGTGAATATGATGCACCGCCTGCCCCACGTGGTCGTGGTCGTGGTCGTGGACGGGGAAGGGGCCGTGGACGTGGACGTGGTCGGAATTTCAGATCAGAAGGAGCAACTGCTTG 2801 0.4452 MEFDEYDYLEKTVEETEDRDSSKKKKESSDKSERSYRKREVDEDLDGEDRKSKRSRGDDENGTKKDRDDRDRERSSREKERHRSGRERDEERERERSSKEKGRDRDRDRDREKDREKERDKDRERDRERRDKEREREKERERERRERDTERERERERREREKEERERSRRSRSRSDRDRDRERELDLRDSRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDAYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFFDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASSGGAGVTGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFAQLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGTQDATAKSADFDDDEGGLALNAQSRALLMQKLDRTGIASSIAGSIGVPISNGSAPAQQAVSLPFGGPGLISAPALPTQIMPTPVAEPVGTPSECLLLKNMFDPATETDPDFDVDIKEDVEEECSKFGRVKHIYVDKRSAGFVYLKFETVEAASAAQRSMHMRWFARRLISAVYVQPQKPKPYPHADKSKESLRERDRGSDRLSGSQASKVRSQLAQTTTLRTQHNPTMDRYQRVEKPKAETPINENEIRITSQGRMRNYITYATTLLQEKGSDEIVLKAMGRAINKTVMIAELIKRRIVGLHQNASIGSIDITDTWEPLEEGLLPLETTRHVSVITITLSKKELDTSSTGYQPPLPADQVKPLNEYEEDGDGSPRMRGRGRGRRGRGRGRGYYNMVMEYNGDGWDGGRGYGGRGGRGGARGRASRGRGRNYGVGYYDYGEYDAPPAPRGRGRGRGRGRGRGRGRGRNFRSEGATA 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01116 869 SUPERFAMILY RNA-binding domain, RBD 482 571 IPR035979 GO:0003676
Bva10g01116 869 Coils Coil 129 171 - -
Bva10g01116 869 TIGRFAM SF-CC1: splicing factor, CC1-like family 99 569 IPR006509 GO:0003723|GO:0005634|GO:0006397
Bva10g01116 869 SUPERFAMILY RNA-binding domain, RBD 313 389 IPR035979 GO:0003676
Bva10g01116 869 Gene3D - 143 297 IPR012677 -
Bva10g01116 869 CDD RRM3_RBM39_like 486 568 - -
Bva10g01116 869 PANTHER CC1-LIKE SPLICING FACTOR 1 572 - -
Bva10g01116 869 CDD RRM2_RBM23_RBM39 315 387 - -
Bva10g01116 869 MobiDBLite consensus disorder prediction 12 181 - -
Bva10g01116 869 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 288 IPR000504 GO:0003723
Bva10g01116 869 SUPERFAMILY RNA-binding domain, RBD 204 307 IPR035979 GO:0003676
Bva10g01116 869 MobiDBLite consensus disorder prediction 576 596 - -
Bva10g01116 869 MobiDBLite consensus disorder prediction 829 869 - -
Bva10g01116 869 SUPERFAMILY AlbA-like 637 750 IPR036882 GO:0003676
Bva10g01116 869 MobiDBLite consensus disorder prediction 571 634 - -
Bva10g01116 869 MobiDBLite consensus disorder prediction 756 772 - -
Bva10g01116 869 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 391 IPR000504 GO:0003723
Bva10g01116 869 Gene3D - 309 405 IPR012677 -
Bva10g01116 869 MobiDBLite consensus disorder prediction 597 621 - -
Bva10g01116 869 Gene3D - 482 590 IPR012677 -
Bva10g01116 869 MobiDBLite consensus disorder prediction 739 782 - -
Bva10g01116 869 Gene3D - 635 739 IPR036882 GO:0003676
Bva10g01116 869 CDD RRM1_RBM39_like 212 284 - -
Bva10g01116 869 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 385 IPR000504 GO:0003723
Bva10g01116 869 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 218 280 IPR000504 GO:0003723
Bva10g01116 869 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 510 563 IPR000504 GO:0003723
Bva10g01116 869 MobiDBLite consensus disorder prediction 1 181 - -
Bva10g01116 869 Pfam Alba 640 698 IPR002775 GO:0003676
Bva10g01116 869 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 572 - -
Bva10g01116 869 SMART rrm1_1 314 387 IPR000504 GO:0003723
Bva10g01116 869 SMART rrm1_1 212 284 IPR000504 GO:0003723
Bva10g01116 869 SMART rrm1_1 488 565 IPR000504 GO:0003723
Bva10g01116 869 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 406 505 IPR029123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01116 Bva-Chr10 8012671 8023218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01116 285 386 Eukaryotic Initiation Factors Gene Family AT4G34110 36.893 4.34e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01116 K13091 - gmx:100802446 676.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01602 05 13043530 13049428 Bva10g01116 10 8012671 8023218 ECH
Bva10g01116 10 8012671 8023218 Bva10g01116 10 8012671 8023218 ECH