Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01109 ATGGATTTGGATGATTTCCGATCGGTATTGGAGTCGGCGAGCGTGGACGTGTGGATGTTGATGGATGCCGCAATCACCGTCGCTTCTTTGGATTACGGGAATGAATTGAAGAATCGGAGGGATGGGATCGTTGAGCGGCTTTATGCAGCCACTTCAGCTCCTGCTCAATGTCGGAATTGCCAAGTCAACGATAATATGAGGCCTAATGGCCACGAAATCAACGCCAAATCAACAAGAGGTCCCTCACCTTCAACGCCGCAGTCTCTAGGTAAACAAGAAGAACACGAAGGCGAGGAGGAGGGGGAGGAGGAGGTGGAGGAGGAGGACAACCAGTTGGATCCTTACGGGGGCTTGTTCGATGACGAGCAGAAGAAGATTCTAGAGATTAAAGAGCAACTTGAAGATCCTCAGCAGTCTGAAGAATCGGTGGTGGAGCTGCTACAAAATCTTGCAGACATGGATATCACATTCCAAGCGCTTAAGGAAACTGATATTGGGAGACATGTTAATCGGTTACGAAAGCATCCATCCAATGATGTTCGCAGATTGGTGAAGCTACTTGTCAGGAAATGGAAGGATATTGTAGATGAATGGGTCAAGTTGAATCAACCTGGAGAACACACTTCTCTCATGGCTGATGGAGACTCGCCTCAGCAGAAGAATTCACAAAATGGGCATCATCAGaTTCCTGAGTTTGCATACTCTCCAAATCCACACAATGGGAGTTCTGGGTCAGAACGGAATAATTCAGAAGCAGAACCGAAACCTAAAGCAATGTCTCGAAAAGAAGCTCCTCGAAAACCAGCACCATCACCATCAGTTCCTGTTCCTTCTTCTGCTCCTCCTCCCCAAAATAGACAGAGAGAACAGAGAGACAGCAGTTTCGACGCCGAGAGACTTGCCTCGGCCAGAAGACGGCTTCAAGAGAACTACAAAGAGGCTGAAAATGccaaaaaacaaagaactaTTCAAGTGATGGACATCCATGATTTACCAAAGCCCAAGAATAAGAATGTCTTCTTTGGAAAGAATAAAGGCGGCGGCGGTTCTCAGGGAAGGCACTGGTG 1067 0.4686 MDLDDFRSVLESASVDVWMLMDAAITVASLDYGNELKNRRDGIVERLYAATSAPAQCRNCQVNDNMRPNGHEINAKSTRGPSPSTPQSLGKQEEHEGEEEGEEEVEEEDNQLDPYGGLFDDEQKKILEIKEQLEDPQQSEESVVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKLLVRKWKDIVDEWVKLNQPGEHTSLMADGDSPQQKNSQNGHHQIPEFAYSPNPHNGSSGSERNNSEAEPKPKAMSRKEAPRKPAPSPSVPVPSSAPPPQNRQREQRDSSFDAERLASARRRLQENYKEAENAKKQRTIQVMDIHDLPKPKNKNVFFGKNKGGGGSQGRHW 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01109 355 Pfam TFIIS helical bundle-like domain 146 195 IPR017923 -
Bva10g01109 355 ProSiteProfiles TFIIS N-terminal domain profile. 121 198 IPR017923 -
Bva10g01109 355 MobiDBLite consensus disorder prediction 60 118 - -
Bva10g01109 355 MobiDBLite consensus disorder prediction 250 264 - -
Bva10g01109 355 MobiDBLite consensus disorder prediction 96 115 - -
Bva10g01109 355 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 120 209 IPR035441 -
Bva10g01109 355 Coils Coil 297 324 - -
Bva10g01109 355 MobiDBLite consensus disorder prediction 212 249 - -
Bva10g01109 355 MobiDBLite consensus disorder prediction 206 355 - -
Bva10g01109 355 MobiDBLite consensus disorder prediction 289 336 - -
Bva10g01109 355 SMART TFS2_5 126 197 IPR003617 GO:0005634
Bva10g01109 355 MobiDBLite consensus disorder prediction 268 282 - -
Bva10g01109 355 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 123 206 IPR035441 -
Bva10g01109 355 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 355 IPR044790 -
Bva10g01109 355 CDD TFIIS_I 123 196 - -
Bva10g01109 355 MobiDBLite consensus disorder prediction 60 90 - -
Bva10g01109 355 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01109 Bva-Chr10 7972971 7975999 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Bva10g01109 Med26 1.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01109 - - aip:107622503 473.781