Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01099 ATGTATGCTTCTAGTTCTACTCCCCCTGCTGCACAGCTCTTTCAGGATCTTCCTGGGAACTTGCACTCAAGAAGATTACTGTTTCACAACCTACTTAACCAATCACCCAACTCAGCCAATCCCCCAACTTCCACAAACAGCCACAACTCCACAGATTCATTTATAGGTGATGGCAATTTTGATGCAAATGTTGTTATGGTACTCTCAGTCCTACTCTGCGCTCTAATTTGCTCACTGGGGTTGAACTCCATCATAAGGTGCGCATTAAGGTGTTCGAATTTTATGACAAATGATTCTGGGAGTAATCCTCCTGCTCGATTGGCCAACACAGGAATCAAGAAAAAGGCTCTTAAGACTTTCACAACAGTAAGCTACTCTCCTGAGTTGAAACTGCTTAGCTTGGACACAGAGTGTGTCATATGCCTATCAGATTTTACTAATGGTGATCGTGTTCGCATTTTGCCCAAGTGCAACCATGGCTTCCATGTCCGCTGCATTGACAAATGGCTAAGTTCACACTCCTCTTGCCCTAAATGCAGACAGTGCTTAATTGAGACCTGCCAAAAGATTGTTGGCTGCAGTCAGGCTACCTCAACTCAACCACCTGCGCAGCCAGTACCAGTGCCAGAAACCATTGTAAGGATTGCAACATTAGAACCTGAAGCTCCAGTCCGCAACTACAGGGAAGTTGTTAGCTA 698 0.4513 MYASSSTPPAAQLFQDLPGNLHSRRLLFHNLLNQSPNSANPPTSTNSHNSTDSFIGDGNFDANVVMVLSVLLCALICSLGLNSIIRCALRCSNFMTNDSGSNPPARLANTGIKKKALKTFTTVSYSPELKLLSLDTECVICLSDFTNGDRVRILPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIETCQKIVGCSQATSTQPPAQPVPVPETIVRIATLEPEAPVRNYREVVS 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01099 232 Pfam Ring finger domain 137 180 IPR001841 -
Bva10g01099 232 CDD RING-H2_EL5_like 137 180 - -
Bva10g01099 232 PANTHER RING-H2 FINGER PROTEIN ATL78 8 229 IPR044602 GO:0016567|GO:0016740
Bva10g01099 232 PANTHER RING-H2 FINGER PROTEIN ATL78 8 229 - -
Bva10g01099 232 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Bva10g01099 232 SUPERFAMILY RING/U-box 133 185 - -
Bva10g01099 232 SMART ring_2 138 179 IPR001841 -
Bva10g01099 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 184 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01099 Bva-Chr10 7920176 7924765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01099 39 184 C3H Transcription Factor Family AT3G10910 50.000 9.57e-43 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01099 K19040 - gmx:100787934 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01099 10 7920176 7924765 Bva10g01099 10 7920176 7924765 ECH
Bva08g00973 08 4952116 4953133 Bva10g01099 10 7920176 7924765 ECH