Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01087 ATGAAATTTAGTCCCAATGGCGAGTATCTAGCAAGCGGTGGCGAAGATGGGGTTGTTCGCATTTGGCGTGTTATATCATTGGATACATCCACAGCACTAGACAGTTTTATCAGCAAAGTAACAGAGGATATCTCCTCTTCTTGGAAGAAACGGTCAAGCCAACCCCACATCTTCCTTCCAAAAAAGGTTCTGCAACTTGAGGAAACACCTCTGCATGAATTCTATGGCCATTCCAGTGATATCTTGGATTTGGCATGGTTTAATTCAGATATTCTCCTTTCAGCTTCTATGGATAAAACCGTTCGGTTGTGGCGAGTTGGTTGTAATCAATGTCTAAGTGTTTTCCCCCACAAAGACTACGTGACCTGCATTCAATTCAATCCTGTTGATGAAAATTACTTCATCAGTGGGTCAATAGATGGTAAAGTTCGAGTATGGGGGACATATGAAGGGCGAGTGGTTGATTGGGCAGATGCACGAGATGTGATAACAGCTATAAGTTACCAGCCTGATGGGAAAGGTTTTATAGTTGGTTCCCTTACAGGCACTTGTCGTTTTTATGTTGCTTCAGGCAAATATTTCCAGCTTGAGGCACAAATAGATATTgatggaaagaagaaaaccgcTGGCAACAAGATTACTGGCATTCAGtTTTCCCAGGATAAACATCAGAGAGTTATGATCTCTTCAGAAGATTCAAAGCTTCGTATATTGGATGGCATAAATGTTGTGCAGAAATACAGAGGTCTTCCAAAGTCAGGAAGTCAGATGTCAGGGTCTTTTACATGTAGTGGAAGACATATAATTTCAGTTGGAGAGGACTGTCGTGTGTATGCTTGGAATTACAGAGAGATGGAAAATGCATCACTTAAACAGAAAAAATCTGAACGCTCCTGTGAATACTTCTTCTCAGAGGGTGTGACTGTTGCTGTTCCATGGTCAGCCATGACAAGAGAACAAAAGATCTCTCAGAGTCCCTGCAATTCTGCTCACTGTCGTTCAGAAATGCAAGACCACATTTGTGTTAGAGAGCTGGAacgtttttcttttggaaattgGTTCTCCATTGATGCTACATGCCGAGTGTCTACGACATGGCCTGAGGAGAAACTTCCTATTTGGGATTTTCCCTTTAGAGAAGGAGAATATGATCAGCATCGGCAATCTGCGGAAGATCCTTGTCAGTGTCACCACAGCTCTCTATCAGAAACATGGGGACTATCCATTGTGACAGCTGACTGTGATGGAACAATCAAGACATTCCACAACTTGGGATTGCCGGTTAGGCTCTA 1292 0.4141 MKFSPNGEYLASGGEDGVVRIWRVISLDTSTALDSFISKVTEDISSSWKKRSSQPHIFLPKKVLQLEETPLHEFYGHSSDILDLAWFNSDILLSASMDKTVRLWRVGCNQCLSVFPHKDYVTCIQFNPVDENYFISGSIDGKVRVWGTYEGRVVDWADARDVITAISYQPDGKGFIVGSLTGTCRFYVASGKYFQLEAQIDIDGKKKTAGNKITGIQFSQDKHQRVMISSEDSKLRILDGINVVQKYRGLPKSGSQMSGSFTCSGRHIISVGEDCRVYAWNYREMENASLKQKKSERSCEYFFSEGVTVAVPWSAMTREQKISQSPCNSAHCRSEMQDHICVRELERFSFGNWFSIDATCRVSTTWPEEKLPIWDFPFREGEYDQHRQSAEDPCQCHHSSLSETWGLSIVTADCDGTIKTFHNLGLPVRL 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01087 430 ProSiteProfiles Trp-Asp (WD) repeats profile. 1 32 IPR001680 GO:0005515
Bva10g01087 430 ProSiteProfiles Trp-Asp (WD) repeats profile. 114 146 IPR001680 GO:0005515
Bva10g01087 430 ProSiteProfiles Trp-Asp (WD) repeats profile. 74 114 IPR001680 GO:0005515
Bva10g01087 430 Pfam WD domain, G-beta repeat 69 104 IPR001680 GO:0005515
Bva10g01087 430 Pfam WD domain, G-beta repeat 110 146 IPR001680 GO:0005515
Bva10g01087 430 Pfam WD domain, G-beta repeat 2 22 IPR001680 GO:0005515
Bva10g01087 430 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1 24 - -
Bva10g01087 430 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 114 146 - -
Bva10g01087 430 Gene3D - 1 314 IPR015943 GO:0005515
Bva10g01087 430 PRINTS G protein beta WD-40 repeat signature 134 148 IPR020472 -
Bva10g01087 430 PRINTS G protein beta WD-40 repeat signature 10 24 IPR020472 -
Bva10g01087 430 PRINTS G protein beta WD-40 repeat signature 92 106 IPR020472 -
Bva10g01087 430 SMART WD40_4 1 23 IPR001680 GO:0005515
Bva10g01087 430 SMART WD40_4 240 281 IPR001680 GO:0005515
Bva10g01087 430 SMART WD40_4 67 105 IPR001680 GO:0005515
Bva10g01087 430 SMART WD40_4 108 147 IPR001680 GO:0005515
Bva10g01087 430 SMART WD40_4 150 188 IPR001680 GO:0005515
Bva10g01087 430 SMART WD40_4 195 239 IPR001680 GO:0005515
Bva10g01087 430 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 74 106 - -
Bva10g01087 430 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 430 - -
Bva10g01087 430 SUPERFAMILY WD40 repeat-like 2 420 IPR036322 GO:0005515
Bva10g01087 430 PANTHER WD REPEAT DOMAIN 44 1 430 IPR040324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01087 Bva-Chr10 7865144 7870528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01087 71 278 U-box Gene Family AT2G33340 28.000 1.12e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01087 K20241 - gmx:100780979 603.594