Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01084 ATGGCTCCTGCCACCTCGGCGGCGGCGGCTCAGAGGCTCGTCGGCTTTAGTCGCCGCACGCAGGCACCGCGCCACTCATCACCGCCGGCCTCTCAGCCACAGAAAAAGTATAAGTCTCTGACCGAGATATTGGCGAAAGCCCGCTTTGCTGTCGTTGAGCGAGAGGATTACAGCGACGTAGTCTGTAAGCAATGCGGGTCCGGTGAACAACAAGACGAGCTGCTCCTATGTGACAAATGCGATAAAGCCTTCCATATGAAATGCCTGAGACCCATTGTGGCCAGAATCCCGATTGGATCATGGCTGTGCACTAAGTGTTCGGGAGAGAGAAGAATAAGAAgATTCTCCCAGAAGaagattattgattttttcGGGATTCAGAAGGGTACTGATGCTAAACACAAATGCTCAGATCCTCAAGATGTCAAGAAGCGCAAGAGGCGTTCAGGATTGCTGGtattgcaaaagaaaaggaggagaTTGTTGCCATTTATTCCAACAGAAGATGCTGTCCAGAGACTGAAACAGTTGTGTTCTCTTGCTTCAGCCTTAACAACATTGCATATGGAATTCAGGGATGATCTCACATATTCACCTACAATGGCTCCTAGAGCTGCTAATCAAGCAGAGTTTGAAAATGGTGGCATGCAGGTTCTTCCCAGGGAAGATAAGGAAACCTTGGAATATTGCAAAGCCATGTGTAGAAGAGGCGAATGCCCTCCCCTTTTAGTTGTCTTTGATTCATGTGAAGGCTATACTGTAGAGGCAGATGGCCCGATAAAGGATATGACATTTCTTGCTGAGTACGTTGGCGATGTGGATTACCTTAAGAGCCGAGAGCACGATGATTGTGATAGTATGATGACCCTTCTTCTTGCAACGGATTCTTCCCAAAGTCTCGTCATCTGCCCTGATAAACGTGGAAACATTGCTCGCTTTATTAGTGGCATCAACAATCATACTCAGGAAGGGAGGAAGAAGCAGAACTGTAAATGCGTGAGATACAGTGTTGATGGTGAATGCAGAGTCTTTCTGGTTGCTACTCGTGATATTTCCAAGGGGGAGAGACTATATTATGATTACAACGGATATGAGCATGAATACCCCACTCATCATTTTATCTG 1124 0.4555 MAPATSAAAAQRLVGFSRRTQAPRHSSPPASQPQKKYKSLTEILAKARFAVVEREDYSDVVCKQCGSGEQQDELLLCDKCDKAFHMKCLRPIVARIPIGSWLCTKCSGERRIRRFSQKKIIDFFGIQKGTDAKHKCSDPQDVKKRKRRSGLLVLQKKRRRLLPFIPTEDAVQRLKQLCSLASALTTLHMEFRDDLTYSPTMAPRAANQAEFENGGMQVLPREDKETLEYCKAMCRRGECPPLLVVFDSCEGYTVEADGPIKDMTFLAEYVGDVDYLKSREHDDCDSMMTLLLATDSSQSLVICPDKRGNIARFISGINNHTQEGRKKQNCKCVRYSVDGECRVFLVATRDISKGERLYYDYNGYEHEYPTHHFI 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01084 374 ProSitePatterns Zinc finger PHD-type signature. 62 106 IPR019786 -
Bva10g01084 374 PANTHER HISTONE ACETYLTRANSFERASE 6 371 - -
Bva10g01084 374 MobiDBLite consensus disorder prediction 20 36 - -
Bva10g01084 374 Gene3D SET domain 145 374 IPR046341 -
Bva10g01084 374 CDD SET_ATXR5_6-like 237 374 - -
Bva10g01084 374 ProSiteProfiles SET domain profile. 240 362 IPR001214 GO:0005515
Bva10g01084 374 SMART set_7 240 368 IPR001214 GO:0005515
Bva10g01084 374 Pfam SET domain 267 362 IPR001214 GO:0005515
Bva10g01084 374 Pfam PHD-finger 61 107 IPR019787 -
Bva10g01084 374 ProSiteProfiles Zinc finger PHD-type profile. 59 109 IPR019787 -
Bva10g01084 374 SMART PHD_3 61 107 IPR001965 -
Bva10g01084 374 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR5 6 371 - -
Bva10g01084 374 SUPERFAMILY SET domain 229 362 IPR046341 -
Bva10g01084 374 SUPERFAMILY FYVE/PHD zinc finger 27 107 IPR011011 -
Bva10g01084 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 120 IPR013083 -
Bva10g01084 374 MobiDBLite consensus disorder prediction 16 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01084 Bva-Chr10 7854460 7858541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01084 57 112 C2H2 Transcription Factor Family AT3G01460 42.857 2.41e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva10g01084 SET 7.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01084 K24406 - tcc:18611813 599.742