Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01059 ATGAAGGAAGCTCAAATGACGATTCCCCACTTGTTCAGATGCCCTATCAGTCTTGATTTGTTCCAAGATCCAGTGACTTTATGCACAGGCCAAACCTATGATAGGTCGAGCATAGAAAAGTGGTTGGCTGCTGGTAATCTCACTTGTCCTGTCACAATGCAGAGGCTTCATGATCCATCCATTGTTCCCAATCACACTCTACGCCATTTGATCGATCAGTGGCTTCAGATGGGTTCCCAATTCGACCCTGGTAATTCTGCAGCAATTGATTCTTTAGCAGCACTGAAACAAAGCCTTGAATCAGAGGAGACCACCTTAGAGAACAAGCTCCAATCACTTGAGAAAATCAGAGTCTTATCTGATGAATATTGTTCTTTCAAGAAATCTTGTTTCTTCCAATTGGGCTTGTTACCTTTACTGTTGGAGCTTGTTTTTGGACGGTTGCAGCCTCCCCAGCTCAACAAACATGACATGCAGCAGTTCATAGAGGTAGCACTTTGTTGCATTCTAAAATTACTGCATCTTGGCAGTTTGGAGCCTTTAAATGTGCTCAAACAAGAATCCAAAATGGCAACATTCCTGCTATTATTTGAACAGGGAACTAGCATGATCAAGACCAGTTTGTGTGATCTTATAGATTTAGCATCATCGTCATCGGATCCGGAAACACAGGAGTTGTGTTCTATGCTTGGAAACTGTCACAAACTGGTGCATGAGATGGTTGTCTTTGTTggccaaaattttaaagctgGAATTAAAGGAATATCAGCATTATGCTCTTGGCAATCTAACAGagaaaatttagtaaaagCAGGAGCAATAGATGGAATCATAAAATACATTTCAGGTTGTGAAAGTGAAAGACGACATGAGAAGATATTGATGGCTCCAATGGCAATGGCTATGTTGGAGAAACTTCTGGTATTAGAGAGTGGAAAAgatgcattaattaataacccAAATGGTATTGAAACTTTGGTAAAAATGGTTTTCAGGGTATCTGATCAAGAGTGCAGTGAGGGTGCCGTTGGGTCACTGGTGATTGTTTGTGGTGATCACGGGTGTGCTAGAGAGGAAGCCATTGCTGCAGGAATTCTCACTCAGTTACTGCTGCTTCTGCAGAGCCAATGTAGCAGCACAACAAAAGCAAAGGCTAGAATGCTGCTCAACTTGCTAAGATCCTA 1184 0.4037 MKEAQMTIPHLFRCPISLDLFQDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQRLHDPSIVPNHTLRHLIDQWLQMGSQFDPGNSAAIDSLAALKQSLESEETTLENKLQSLEKIRVLSDEYCSFKKSCFFQLGLLPLLLELVFGRLQPPQLNKHDMQQFIEVALCCILKLLHLGSLEPLNVLKQESKMATFLLLFEQGTSMIKTSLCDLIDLASSSSDPETQELCSMLGNCHKLVHEMVVFVGQNFKAGIKGISALCSWQSNRENLVKAGAIDGIIKYISGCESERRHEKILMAPMAMAMLEKLLVLESGKDALINNPNGIETLVKMVFRVSDQECSEGAVGSLVIVCGDHGCAREEAIAAGILTQLLLLLQSQCSSTTKAKARMLLNLLRS 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01059 394 Gene3D - 201 394 IPR011989 -
Bva10g01059 394 PANTHER OS02G0542800 PROTEIN 6 394 - -
Bva10g01059 394 Pfam U-box domain 8 76 IPR003613 GO:0004842|GO:0016567
Bva10g01059 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Bva10g01059 394 ProSiteProfiles U-box domain profile. 7 81 IPR003613 GO:0004842|GO:0016567
Bva10g01059 394 SUPERFAMILY RING/U-box 4 76 - -
Bva10g01059 394 CDD RING-Ubox_PUB 12 54 IPR045210 -
Bva10g01059 394 SMART Ubox_2 11 74 IPR003613 GO:0004842|GO:0016567
Bva10g01059 394 PANTHER WDSAM1 PROTEIN 6 394 IPR045185 GO:0061630
Bva10g01059 394 Coils Coil 89 116 - -
Bva10g01059 394 SUPERFAMILY ARM repeat 92 391 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01059 Bva-Chr10 7720432 7722566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01059 8 378 U-box Gene Family AT3G19380 30.227 5.75e-44 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01059 - - gmx:100815247 517.694