Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01049 ATGAGTAACGGCACCCGTAAACGGCCATCACCACCGTTTCAACCTTCGCCGGGCCCCCAACCTAAAATTCAAGCATTCTCTCAGGAAGAGGAATTGGCAGACGAGGACTTATTCCGCGATGAAACCCTTATTTGCGAAGACGAAGAATCCCTTATTCTCCGTGACATCGAGCAGCGCCAGACTCTTGCGTCCCGCCTTGCGAAGTGGACTCGTCCACCTCTGTCCTCGGAGTACCTTTCACAATCTCGAAGCATCATTTTTCAGCAGCTTGAGATTGATTACGTAATTGGGGAGAGTCATAAAGAATTGCTTCCAAATTCTTCAGGACAGGCTGCCATTATTAGAATATTTGGAGTTACAAAGGAAGGACATAGTGTTTGCTGCAATGTTCATGGATTTGAGCCATACTTTTACATCAGTTGCCCTCCTGGAATGGGTCCTGATGATATTTCCCGTTTTCATCAAATCCTTGAGGGGAGGATGAGAGAGGCTAATAGAAACAGTAATGTACCAAAATTTGTTCGTCGTATTGAAATGGTGCAGAGAAGGAGTATTATGTACTATCAGCAGCAGAGCTCTCATACCTTTCTTAGAATTGTTGTTGCACTGCCAACAATGGTTACTAGCTGCCGTGGTATTCTTGACAGAGGCATACAAATTGATGGTATAGGCATGAAGAGCTTCATGACCTATGAAAGCAATGTGCTGTTTGCACTTCGTTTCATGATTGATTGCAACATAGTTGGTGGCAACTGGATTGAAGTACCGGCTGGAAAATATAAGACAGAAAAAAGCTTGTCTTATTGCCAGTTAGAATTTGATTGTTTGTATTCAGAATTGATTAGTCATGCACCAGAAGGGGAATTTTCGAAGATGGCTCCATTTCGCATATTGAGTTTTGACATTGAATGTGCTGGTCGTAAGGGTCAATTCCCTGAGCCTACCCATGATCCTGTTATCCAGATTGCCAATCTGGTTACCTTGCAAGGGGAAGACCAACCATTTATCCGTAATGTGATGACCCTTAAATTATGTTCTCCTATAGTTGGTGTTGATGTGATGTCATTTGATACAGAAAGAGAAGTGCTGCTCGCTTGGAGGAATTTTATCCGTGATGTGGACCCTGATATTATAATTGGATATAACATCTGCAAATTTGACCTGCCCTATCTTATCGAgAGAGCTGAGACGCTGAAAATATCAGAATTTCCAATTCTAGGCCGCATCAGGAACAGCAGGGTTCGGGTAAAAGATACAACTTTTTCATCACGACAATATGGAACCAGGGAAAGTAAAGAGGTTACCGTTGAAGGGCGAGTTCAGTTTGATTTGCTCCAGGTTGTGCAACGAGATTATAAACTTAGTTCTTATTCTTTGAACTCTGTGTCAGCTCACTTCCTTTCTGAGCAGAAAGAAGATGTTCACCACTCTATTATATCTGACCTCCAGAATGGAAATGCAGAAACTAGAAGGCGCCTTGCTGTCTATTGTTTGAAGGATGCATATCTCCCCCAACGGCTTTTGGACAAATTGATGTTCGTTTACAATTATGTGGAGATGGCTCGAGTAACAGGTGTTCCAATTTCCTTCTTACTTTCAAGGGGGCAAAGCATCAAgGTGCTTTCTCAACTTCTTAGGAAGGCAAAACAGAAGAATTTGGTTATTCCTAATGTCAAACAGGCAGGATCTGAACAAGGAACATATGAAGGTGCCACTGTACTGGAGGCAAGGGCTGGATTCTATGAAAAACCAATTGCTACGTTAGATTTTGCATCCTTGTATCCGTCCATCATGATGgcatataatttatgttattgtaCTCTGgTAACCCCCGAAGATGTTCACAAGTTCAACCTTCCTCCAGAGTCTGTAAACAAAACTCCTTCTGGCGAAACATTTGTTAAATCGAATTTACAGAAGGGAATACTTCCTGAAATTCTTGAAGAACTACTAGCAGCCCGTAAAAGAGCGAAAGCCGATTTGAAGGAGGCAAAGGATCCCCTTGAGAAGGCTGTGTTAGATGGTCGACAGTTGGCCCTGAAGGTTAGTGCAAATTCAGTATATGGGTTTACAGGGGCTACTGTTGCTCAGTTACCATGCATAGAGATATCATCAAGTGTAACAAGCTATGGTCGGCAAATGATTGAGCACACAAAAAAACTTGTGGAAGATAAATTTACAACCTTTAATGGATACGTACACAATGCTGAGGTGATATATGGGGACACGGATTCAGTCATGGTACAATTTGGTGTTTCCTCTGTGAAAGAGGCTATGGAGTTGGGGAGAGAGGCTGCAGAATATATTAGTGGAACTTTCATCAAACCCATCAAACTAGAGTTTGAGAAGGTTTACTATCCATATCTCCTTATTAGCAAGAAGAGATATGCTGGTTTATTTTGGACAAAACCGGacaattttgacaaaatgGATACTAAAGGCATTGAAACAGTTCGAAGAGACAATTGTTTATTGGTCAAAAACCTGGTAAACAATTGCCTTCATAAAATACTGATTGACAGGGATATCCCTGGGGCAGTCCAGTATGTCAAGAGTGCAATTTCAGATCTTTTAATGAACCGCATGGATTTGTCACTTTTGGTTATCACAAAGGGTTTGACCAAGACAGGAGATGATTATGAAGTAAAGGCAGCTCATGTTGAACTTGCTGAAAGGATGCGTAAGCGAGATGCTGCTACTGCTCCAAATGTTGGGGATAGAGTACCTTACGTTATTATTAAAGCTGCAAAAGGTGCCAAGGCTTATGAGAGATCAGAGGATCCAATCTACGTGCTAGAGAACAACATACCAATAGACCCTCAGTACTATCTTGAGAATCAAATTAGCAAGCCAATTCTGAGGATCTTCGAGCccattttgaaaaatgctaGCAAGGAACTTCTTCATGGAAGCCACACAAGATCTATTTCTATCTCTACTCCATCAAACAGTGGCATAATGAGGTTTGCCAAGAAACAGCTTACTTGCATTGGTTGCAAAGCCTTACTTAGTAATAGAGATCGCACTCTTTGCTCACATTGCAAGGGAAGGGAAGCTGAGCTGTACTGCAAAACAGTGGCTCAAGTTTCTGAGCTAGAGATGCTTTTTGGGAGGCTGTGGACGCAGTGTCAAGAGTGCCAAGGTTCACTTCATCAGGATGTTCTCTGCACTAGTCGAGACTGTCCAATTTTTTACCGACGAAAGAAGGCTCAGAAGGATATGGCTGAAGCAAAGCTGCAATTGGACCGATGGAATTTCTA 3260 0.416 MSNGTRKRPSPPFQPSPGPQPKIQAFSQEEELADEDLFRDETLICEDEESLILRDIEQRQTLASRLAKWTRPPLSSEYLSQSRSIIFQQLEIDYVIGESHKELLPNSSGQAAIIRIFGVTKEGHSVCCNVHGFEPYFYISCPPGMGPDDISRFHQILEGRMREANRNSNVPKFVRRIEMVQRRSIMYYQQQSSHTFLRIVVALPTMVTSCRGILDRGIQIDGIGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPAGKYKTEKSLSYCQLEFDCLYSELISHAPEGEFSKMAPFRILSFDIECAGRKGQFPEPTHDPVIQIANLVTLQGEDQPFIRNVMTLKLCSPIVGVDVMSFDTEREVLLAWRNFIRDVDPDIIIGYNICKFDLPYLIERAETLKISEFPILGRIRNSRVRVKDTTFSSRQYGTRESKEVTVEGRVQFDLLQVVQRDYKLSSYSLNSVSAHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFVYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDVHKFNLPPESVNKTPSGETFVKSNLQKGILPEILEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKVSANSVYGFTGATVAQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTFNGYVHNAEVIYGDTDSVMVQFGVSSVKEAMELGREAAEYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLFWTKPDNFDKMDTKGIETVRRDNCLLVKNLVNNCLHKILIDRDIPGAVQYVKSAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPILRIFEPILKNASKELLHGSHTRSISISTPSNSGIMRFAKKQLTCIGCKALLSNRDRTLCSHCKGREAELYCKTVAQVSELEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKLQLDRWNF 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01049 1086 Pfam C4-type zinc-finger of DNA polymerase delta 996 1067 IPR025687 -
Bva10g01049 1086 PANTHER DNA POLYMERASE DELTA CATALYTIC SUBUNIT 83 1086 - -
Bva10g01049 1086 ProSitePatterns DNA polymerase family B signature. 740 748 IPR017964 GO:0000166|GO:0003676
Bva10g01049 1086 SUPERFAMILY DNA/RNA polymerases 551 961 IPR043502 -
Bva10g01049 1086 Gene3D - 294 512 IPR036397 GO:0003676
Bva10g01049 1086 PRINTS DNA-directed DNA-polymerase family B signature 738 746 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bva10g01049 1086 PRINTS DNA-directed DNA-polymerase family B signature 677 689 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bva10g01049 1086 PRINTS DNA-directed DNA-polymerase family B signature 585 598 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bva10g01049 1086 CDD POLBc_delta 567 960 - -
Bva10g01049 1086 CDD DNA_polB_delta_exo 290 518 - -
Bva10g01049 1086 Pfam DNA polymerase family B, exonuclease domain 120 462 IPR006133 -
Bva10g01049 1086 Gene3D Palm domain of DNA polymerase 567 797 IPR023211 -
Bva10g01049 1086 SUPERFAMILY Ribonuclease H-like 109 532 IPR012337 -
Bva10g01049 1086 Pfam DNA polymerase family B 526 959 IPR006134 GO:0000166|GO:0003677
Bva10g01049 1086 Gene3D DNA Polymerase, chain B, domain 1 90 267 - -
Bva10g01049 1086 SMART polmehr3 293 752 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bva10g01049 1086 Gene3D Helix hairpin bin 641 693 - -
Bva10g01049 1086 Gene3D - 814 969 IPR042087 -
Bva10g01049 1086 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 83 1086 - -
Bva10g01049 1086 MobiDBLite consensus disorder prediction 1 22 - -
Bva10g01049 1086 TIGRFAM pol2: DNA polymerase (pol2) 240 957 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01049 Bva-Chr10 7659403 7673985 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01049 19 1086 Core DNA Replication Machinery Family AT5G63960 82.537 0.0 1873
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01049 K02327 - gmx:100817379 1951.41