Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01032 ATGGATGATAGTGAGAGACTGGGGCAGAATTCCCATGACCATTTGGATGTCGAACTTGTTGACGCCACTTTTCAACAGCAACATTCTACTTCCTTGGAAAAGGATCAGAATGGCGAATCCCTTCATCAGGAGGCCAACGACCACAAGAATGTTAAGTCAGCTACCCATTCTCATCAAGAAGATCAAGTTATGGTTGATGACGCCAATGATAGTAACCCACCGGATAATGTTGATAGTTATTCTAGTCCTAGTCAAATGCCCGAAACCAAAAGCGTTAGTGACAAAATCTATAACCAGAAACAACTTAAAGATGTCAGGTCCCATTCACACGAGGAATCGTTGATTCCAAAGGCTGAAGAAAAGAATGTCAGAGAAATGAAGAACGTGCTAAATGATACTCAGATGACTGGATATGATGAAGCTGGTATGCCTGAAGAACGAGCAGCATTTATGAAGGAGTTGGCGAGTTTCTACAGGGAGAGGGCAATGGAATTTAAACCCCCTAAATTCTATGGAGAGCCACTAAACTGCCTCAAGTTATGGAGAGCTGTCATCAAACTAGGTGGATATGATCTGGTAACTGCATCCAAGTTGTGGCGGCAAGTAGGAGAGTCTTTCCACCCCCCAAAGACTTGCACTACAGTCTCTTGGACGTTTAGGATTTTTTATGAGAAGGCAATCTTAGAATATGAAAGACATAAGAGGGAGATTGGGGAGCTACAGCTCCCCATTGGGTCATTCCGTCAATCTTCAAGTGTTGAAAAGGAGACTAGTGTATACCAGACTCCTGGATCAGGCAGGGCACGAAGGGATGCGGCAGCACGTGCAATGCAAGGTTGGCATGCTCAGCGTCTTTTAGGATATGGTGAGGTTGCTGGGCCAATTATTAAGGAAAAGAGCATAAATTATGCACCAAAGCGTGAAAAGAACCTCAAAAGTATTGGTATGATTAATAAACAGAGAGCACTGTCTGTCCTGGAGCATGCTGAGAGAGCTGCAAATATCGATGGAGATAAGCAACTGGTCACAGCAGTTATGGATATTGGACCTCCAGCTGATTGGGTGAAGATCAATGTGCGGGAAACTAGGGACTGTTTCGAGGTGTATGCCCTAGTTCCTGGGCTTTTGCGTGAAGAGGTACGAGTGCAATCAGATCCAGCTGGACGTCTTGTTATAACAGGTCAGCCAGAGCATGTTGACAATCCATGGGGAATAACACCCTTTAAGAAGGTTGTGAGCTTGCCTGCAAGGATTGATCCACTTCAGACATCAGCTATTGTTAGCCTTCATGGTCGACTTTTTGTACGTGTTCCTTTCCAGCAGGGAGCtatgtg 1334 0.4468 MDDSERLGQNSHDHLDVELVDATFQQQHSTSLEKDQNGESLHQEANDHKNVKSATHSHQEDQVMVDDANDSNPPDNVDSYSSPSQMPETKSVSDKIYNQKQLKDVRSHSHEESLIPKAEEKNVREMKNVLNDTQMTGYDEAGMPEERAAFMKELASFYRERAMEFKPPKFYGEPLNCLKLWRAVIKLGGYDLVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKAILEYERHKREIGELQLPIGSFRQSSSVEKETSVYQTPGSGRARRDAAARAMQGWHAQRLLGYGEVAGPIIKEKSINYAPKREKNLKSIGMINKQRALSVLEHAERAANIDGDKQLVTAVMDIGPPADWVKINVRETRDCFEVYALVPGLLREEVRVQSDPAGRLVITGQPEHVDNPWGITPFKKVVSLPARIDPLQTSAIVSLHGRLFVRVPFQQGAM 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01032 444 SMART ARID_2 141 231 - -
Bva10g01032 444 MobiDBLite consensus disorder prediction 35 65 - -
Bva10g01032 444 MobiDBLite consensus disorder prediction 72 96 - -
Bva10g01032 444 SUPERFAMILY HSP20-like chaperones 351 440 IPR008978 -
Bva10g01032 444 SUPERFAMILY ARID-like 134 243 IPR036431 GO:0003677
Bva10g01032 444 CDD ARID 146 231 - -
Bva10g01032 444 Pfam Hsp20/alpha crystallin family 360 440 IPR002068 -
Bva10g01032 444 MobiDBLite consensus disorder prediction 1 97 - -
Bva10g01032 444 CDD ACD_sHsps_p23-like 359 438 - -
Bva10g01032 444 MobiDBLite consensus disorder prediction 1 19 - -
Bva10g01032 444 Pfam ARID/BRIGHT DNA binding domain 147 231 IPR001606 GO:0003677
Bva10g01032 444 Gene3D - 339 443 IPR008978 -
Bva10g01032 444 SMART bright_3 145 236 IPR001606 GO:0003677
Bva10g01032 444 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5 33 441 - -
Bva10g01032 444 Gene3D - 145 242 IPR036431 GO:0003677
Bva10g01032 444 ProSiteProfiles ARID domain profile. 144 235 IPR001606 GO:0003677
Bva10g01032 444 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 343 444 IPR002068 -
Bva10g01032 444 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 33 441 IPR045147 GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01032 Bva-Chr10 7504086 7512396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01032 116 441 ARID Transcription Factor Family AT1G76510 67.584 1.18e-155 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Bva10g01032 HSP20 0.00011 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01032 - - adu:107461292 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01032 10 7504086 7512396 Bva10g01032 10 7504086 7512396 ECH