Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01030 ATGGCATACCCGCCGATTCAGGGTCCAAGCCCAGGATCGAGTTCAAGTTCTGGCTTTCAATTATTGAACTCTCCTTTCGGTGATACTACTTATACCAAAGTCTTTGTTGGGGGTTTGGCGTGGGAAACTCAAAGCGAAACTATGCGACGCTACTTCGAGCAGTTTGGCGAGATTCTGGAGGCCGTTGTAATCACCGATAAGAATACCGGGCGATCCAAAGGCTATGGTTTCGTGACTTTCCGGGATCCTGAGGCTGCTAGGAGAGCCTGTGTTGATCCAACTCCAATCATTGATGGTCGGAGGGCAAATTGTAACCTCGCTTCACTTGGGCGCCCACGGCTTCCTCTGCCTCATGGCCGTTTGAGACCCCCCTCCCCTTACGTTGGAAGTTTGCAACCAGCTCGAGGTGCTTATGTTGGAAATTTTGGCTACCATCAGCCACTTTCTTACAGCTATCAACAAGGGTTGGTTTATCCTCCTTATGGGTATACGACATATGGACCTGAATACATCTATCCGCAGGGTTTGTATAACCCATTTCTGGGTCAACAGTATCTTCAGATATATGGAATGCCTGGGACTGTGAATGCAACTCCTTATCCTTATGGGCAATTCAGTCAAGCTATTCCTAGTGGTCATGCTTATACTGCAATGCAGGGTTATGCTGTACCAGGTCATCAGATTGTTTCCTATGGTGGATCCAATGTTAATGCCATGACAACATCACCTATGCCTACCATTCAAGCACCATATCCTAGTGGAATTGCTGCACCAGTTCCAGGTCAACCCCAATTCATTGTTCCTGCTCCTTCTCCGCAGTTTATGCAAGGTAGCGGTCCTGACCAAACAGTTGGCCTTgcaagttatttattttgcattctAGAGGTCATATATAGTCATGCTCACCAAGAAGTTGTGTCTGAGTCGCTCCAGATGGTGGAGAAGGAAAAGTGGAAGATGCAGGGGCTGCTTTTCAATTTGGATGTTAATGCTAGTGTATCCCACATTATACTACTGGCACTCGGGAAGAGTGGAGGTAGTATTGGATCAACGGGTGCTGGAATAGGTTTCTGGCAGCCATAGTTTATCAATTCTGGTTTACCTTCTAAGAACCTTAGGATTTACAAGTACTTTAGGAATTCAATTGTGAAGCAATTCAGGGATAATCCTTCCAGAAAGATTACCTTGACGGATGTGAGGAAAACGCTTGTGGGTGATGTGGGTTCTATCCGTAGTATCTTAGATTTCCTGGAAGCATGGGGTTTGATCAATTACCAACCAGCCTCAGTTTTGAACCAACCCTTCATGTGGGAAGATGAGGAGAGCAAGCGTGGTGGGCCGACCGAACCTACTGGTAATCCCATTGAACCATCAGCTCCAATCAGAGACAACTCCAAGAGAATCTGCAGTGGTTGCAAAGCGGCCTGTACAATTGCTTGCTTATTTGATAGAATTTTATCTCGACTATATAAGCACTCTATCTACCCGCCCACTAAAGAGAGGCAGGTTTTGGTGgataaaactcaaacttacACTCGTGCAGCTGGTGGTGCATCCTGGTTGAATCATCATTGTGATGCTCGTGCGAAGACTCCCcttcttatttcttctccTGAATACTA 1622 0.4501 MAYPPIQGPSPGSSSSSGFQLLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRPRLPLPHGRLRPPSPYVGSLQPARGAYVGNFGYHQPLSYSYQQGLVYPPYGYTTYGPEYIYPQGLYNPFLGQQYLQIYGMPGTVNATPYPYGQFSQAIPSGHAYTAMQGYAVPGHQIVSYGGSNVNAMTTSPMPTIQAPYPSGIAAPVPGQPQFIVPAPSPQFMQGSGPDQTVGLASYLFCILEVIYSHAHQEVVSESLQMVEKEKWKMQGLLFNLDVNASVSHIILLALGKSGGSIGSTGAGIGFWQPFINSGLPSKNLRIYKYFRNSIVKQFRDNPSRKITLTDVRKTLVGDVGSIRSILDFLEAWGLINYQPASVLNQPFMWEDEESKRGGPTEPTGNPIEPSAPIRDNSKRICSGCKAACTIACLFDRILSRLYKHSIYPPTKERQVLVDKTQTYTRAAGGASWLNHHCDARAKTPLLISSPEY 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01030 539 SUPERFAMILY RNA-binding domain, RBD 31 144 IPR035979 GO:0003676
Bva10g01030 539 Pfam SWIRM domain 360 424 IPR007526 GO:0005515
Bva10g01030 539 PANTHER RNA-BINDING PROTEIN 38-LIKE ISOFORM X1 1 282 - -
Bva10g01030 539 Gene3D - 356 428 IPR036388 -
Bva10g01030 539 SMART rrm1_1 33 105 IPR000504 GO:0003723
Bva10g01030 539 CDD RRM_RBM24_RBM38_like 32 107 - -
Bva10g01030 539 Gene3D - 27 111 IPR012677 -
Bva10g01030 539 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 109 IPR000504 GO:0003723
Bva10g01030 539 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 89 IPR000504 GO:0003723
Bva10g01030 539 PANTHER BOULE-RELATED 1 282 IPR037366 GO:0003729
Bva10g01030 539 MobiDBLite consensus disorder prediction 439 459 - -
Bva10g01030 539 SUPERFAMILY Homeodomain-like 365 436 IPR009057 -
Bva10g01030 539 ProSiteProfiles SWIRM domain profile. 372 433 IPR007526 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01030 Bva-Chr10 7493639 7500799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01030 21 108 C2H2 Transcription Factor Family AT2G19380 43.182 5.89e-16 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-SWI3 Bva10g01030 SWIRM 5.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01030 - - aprc:113864528 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01030 10 7493639 7500799 Bva10g01030 10 7493639 7500799 ECH