Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01029 atgcttgtgCTTTTGCGTTTCTTAGTCCTTGATCTAGCAGAAAGTTGTGctaattttctgtttctcttttttgttacACAGTATGTCTTGACTCTTTGTGCGAGATGTTATGTTCATGGAAATTACTGGGTTGGTGTAAGCTCTTCAGATTTTAGACGAGTGGAGATAAGTGAGGAGACAAAGGCAAATTGGACAGATAAGGAAACTTTGCATCTTGTGGAAGCCATTATGCATTATGGTGATGACTGGAGGAGAATTGCTCAGCATGTTGGTGGTCGAAGTGAGAAGGAATGCATTGCTCATTTATTAAGCTTCCTTCTGGGGAGGAATTACTCCTTAACCAAGATGCTGGTGCTAGCCATGACAGATGTAATCAACCAGAGGGACTGGCTGATCGTGAATGCAGATTGGAAATCATTGGCTCAGGGGAGCAAAGTAAAAGAATGCGTCTA 452 0.3938 MLVLLRFLVLDLAESCANFLFLFFVTQYVLTLCARCYVHGNYWVGVSSSDFRRVEISEETKANWTDKETLHLVEAIMHYGDDWRRIAQHVGGRSEKECIAHLLSFLLGRNYSLTKMLVLAMTDVINQRDWLIVNADWKSLAQGSKVKECV 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01029 150 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 110 IPR017930 -
Bva10g01029 150 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3B 26 115 - -
Bva10g01029 150 SMART sant 60 108 IPR001005 -
Bva10g01029 150 SUPERFAMILY Homeodomain-like 60 107 IPR009057 -
Bva10g01029 150 ProSiteProfiles SANT domain profile. 59 110 IPR017884 -
Bva10g01029 150 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Bva10g01029 150 CDD SANT 63 101 IPR001005 -
Bva10g01029 150 Pfam Myb-like DNA-binding domain 63 104 IPR001005 -
Bva10g01029 150 Gene3D - 59 105 - -
Bva10g01029 150 PANTHER SWI/SNF COMPLEX-RELATED 26 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01029 Bva-Chr10 7491379 7494628 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01029 32 104 EF-hand Containing Proteins AT3G07740 32.143 1.34e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bva10g01029 Myb_DNA-binding 2.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01029 K11649 - qsu:112010646 143.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01029 10 7491379 7494628 Bva10g01029 10 7491379 7494628 ECH