Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01028 ATGTCAGGGTCTGAGACAGGGGTGATGACTTCTACTACTACTACCAGTAGAGAGCCACAACCATTCACGGTGGGCCTGCAGAAAGCCGCGGTGCTTCCGTCACATTCACAGCCAGTGCCTGTTGCGGTGGTGCAAAACATGCGCTTAGCCTATGGTTCTGATGGCACAGCTGTCTATAAGCCCGTTTCAGCACCATCGCCATCGCCATTGCAAACCTATCAGTCCTCAGTTACCGGAAGCGGGGGTGAAGGTGGTTCAACGGTCTCCCAGGCGCAACCACAGGGAAGTAACGTGAATATGGGTAGTGAACCGTTGAAAAGGAAGAGAGGGAGGCCAAGGAAATATGGGCCAGATGGCAGCATGGCATTGGGCAATGTGACCGTTAACCAGTCCTGTGCAAGTGGAgcattttctccttctccgcCACCTTCCTCACCCCCTTCCTTCAAGAAACCCAGAGGCAGACCCCCTGGTTCTAGTAATAGTAAGAAGCAACAATTAGAGTCTCAAGGATCAACCCGAGTTGGGTTTACTCCCCATGTTATCACTGTGAAAGCTGGAGAGGATGTGTCATCaaaaattatgtcattttcCCAGCATGGTCCAAGGGCAGTTTGCATCTTGTCAGCAAACGGAGCCATATCTAATGTGACACTACGCCAACCTGCCACATCTGGTGGAACTGTGACTTACGAGgGTCGGTTTGAGATCCTATCACTTTCTGGATCCTTTCTTCTATCTGAAAATGGTGGTCAGCGGAGTAGAACTGGTGGATTAAGCGTGTCCTTATCTGGACCAGATGGTCGTGTTTTGGGCGGTGGTGTGGCAGGGCTTTTGACTGCGGCTTCCCCTGTTCAGGTAATAGTAGGGAGTTTCATCGCTGATGGTTGTAAGTCAGGAAACCCAATGGAAATTTTATCCGCCCCAAGTAGTGGTCTTGCAGTTGCAGGGCAAAGCAGCTCTCCTTCACGTGAGTCATCAGGTGGCCCTGGGAGCCCACTTAATCAGAGCACTGGAGTCTGCATTAACAGTAACCCACAAGGCCTTACAAGCATGACATGGAAATA 1067 0.4939 MSGSETGVMTSTTTTSREPQPFTVGLQKAAVLPSHSQPVPVAVVQNMRLAYGSDGTAVYKPVSAPSPSPLQTYQSSVTGSGGEGGSTVSQAQPQGSNVNMGSEPLKRKRGRPRKYGPDGSMALGNVTVNQSCASGAFSPSPPPSSPPSFKKPRGRPPGSSNSKKQQLESQGSTRVGFTPHVITVKAGEDVSSKIMSFSQHGPRAVCILSANGAISNVTLRQPATSGGTVTYEGRFEILSLSGSFLLSENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVIVGSFIADGCKSGNPMEILSAPSSGLAVAGQSSSPSRESSGGPGSPLNQSTGVCINSNPQGLTSMTWK 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01028 355 SUPERFAMILY AF0104/ALDC/Ptd012-like 177 293 - -
Bva10g01028 355 MobiDBLite consensus disorder prediction 65 101 - -
Bva10g01028 355 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10-LIKE ISOFORM X1 30 353 - -
Bva10g01028 355 CDD DUF296 178 292 IPR005175 -
Bva10g01028 355 ProSiteProfiles PPC domain profile profile. 173 319 IPR005175 -
Bva10g01028 355 Gene3D - 179 301 - -
Bva10g01028 355 MobiDBLite consensus disorder prediction 139 153 - -
Bva10g01028 355 MobiDBLite consensus disorder prediction 57 178 - -
Bva10g01028 355 MobiDBLite consensus disorder prediction 310 355 - -
Bva10g01028 355 MobiDBLite consensus disorder prediction 1 21 - -
Bva10g01028 355 Pfam AT hook motif 106 117 IPR017956 GO:0003677
Bva10g01028 355 Pfam AT hook motif 150 161 IPR017956 GO:0003677
Bva10g01028 355 MobiDBLite consensus disorder prediction 312 355 - -
Bva10g01028 355 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 30 353 IPR039605 GO:0003680
Bva10g01028 355 SMART AT_hook_2 150 162 IPR017956 GO:0003677
Bva10g01028 355 SMART AT_hook_2 106 118 IPR017956 GO:0003677
Bva10g01028 355 MobiDBLite consensus disorder prediction 158 177 - -
Bva10g01028 355 Pfam Plants and Prokaryotes Conserved (PCC) domain 179 292 IPR005175 -
Bva10g01028 355 MobiDBLite consensus disorder prediction 123 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01028 Bva-Chr10 7486854 7490315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01028 1 355 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 52.895 4.03e-96 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01028 - - pvy:116128622 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01028 10 7486854 7490315 Bva10g01028 10 7486854 7490315 ECH