Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01017 ATGCAGGCCTCGGCATATAGGATGAATTTGTTTGGATTTGTCTGTGGGCGTGGTTTGCTCCTGTTGCTGCTTCTGTTTTGGGGACTCTCTGTGTCtccattttatgtattgtGTGAGAATATCAATATCTCAAGACCCGCCGTTGCGCATATCGGAGCTATCTTCACCTTTGATTCTACAATTGGGAAAGTGGCTAAAATTGCCATGGAAGAAGCAGTGAAGGATGTAAATTCCAATGCTAGCATTTTACGTGGAACCAAACTGGCTCTCTCTACGCAGAATTCCAATTGCAGTGGTTTTGTCGGCATGGTTCAAGCTTTGCGATTCATGGAGACTGATGTCGTTGCAATAATAGGCCCACAATCTTCCGTTGTTGCCCACATAATTTCCCATATTGCAAACGAACTCCAAGTTCCTCTTTTGTCATTTGCAGCAACAGACCCTACGCTCTCTTCTCTTCAGTTCCCATATTTTGTGAGAACAACCCAGAGTGATTTGTTCCAAATGAGTGCTGTTGCCGAAATTGTTGATTATTACGGTTGGAAAGACATTATTGCTATATTTGTGGATGATGAGTATGGAAGAAATGGTGTGTCGGCCTTAGATGATCAACTAGCAGGCAAGCGGTGTAGAATCTCGCACAAGGCAGGAATAAAGTCAGGCCCTGGAGTCGATCGTGGTGAAATAATGGATCTACTAGTGAAGATTGCACTAATGCAGTCTCGGGTCATTGTTGTCCATGTTAACGTTGATTCTGGATTTATGATTTTCAACGTGGCACATTATCTTGGCATGTTGGGCAATGGCTATGTCTGGATAGCCACAGACTGGCTCTCTTCTGTTCTAGATTCCACCTCCCTATCTTCTCAGATGATGGATTCTCTGCAGGGAGTTGTTGTTCTGCGTCAACATACACCTGATTCAGATAGAAAAAGAGCATTTTTCTCTAGATGGAATAAGTTAACGGGTGGCGGTGCTTCTTTGGGTTTACATCCTTATGGCCTCTATGCTTATGATTCTATTTGGCTGGTTGCACATGCTCTCGATGCATTTTTCAACCAGGGCGGGaccatttcattttctaatgaTTCGAGGATCCAAGGTGCCGCCAAAGGCAATCTCAACCTCGAGGCCATGAGCATTTTTGACGATGGGCAGCTTCTATTGAACAAGATACTGGAGAGTAATTTCGTTGGTTTGACAGGTCGCATGAAATTCGATTCTGACAAATCTCTTGTTCGTCCTGcatatgatattattaacGTGGTCGGGACAGGGTTTCGTAGGGTGGGTTACTGGTGTAATTATTCTGGTCTATCAGTTGTCCCTCCCGAAACATTGTATACTAGGCCACCTAATCGATCCAGTGCAAACCAGCAACTGCACAGTGTAATATGGCCGGGAGACACATTATCAAAGCCCCGCGGATGGGTTTTCCCCAGTAATGGAAAACAATTGAGAATTGGTGTGCCTATCCGAGTCAGTTACCGCGAATTTGTATCGCCAATTCGAGGAACTGATATGTTTAAAGGCTTCTGCATTGATGTGTTCACGGCAGCCGTAAACTTGTTGCCATACGCTGTTCCCTTTCACTTTGTCCCATTTGGAGATGGTCATCAAAACCCAAGCTACACACaacttatcaatttgatcACTGCAGGTTATTTGGACGGTGCGGTCGGTGACATCGCCATTGTCACAAATCGAACCAAGATTGTAGATTTTACACAGCCTTATGCTGCATCTGGACTTGTCGTGGTGGcaccatttaaaaaaatcaactctGGGGGTTGGTCTTTCCTGCGGCCTTTTACTCCTCTTATGTGGATTGtcactctttctttcttctttttcgttGGGATAGTTGTATGGAGTCTGGAGCATAGAATAAATGATGAGTTCAGGGGCCCACCCAAACAACAAATCATAACCATTTTATGGTTTAGCTTGTCGACACTATTTTTTGCTCACAGAGAAAATACCATGAGTACTCTTGGTCGCTTGGTCCTACTATTATGGCTGTTTGTGGTTTTGATAATCAACTCAAGCTACACGGCAAGTTTAACATCAATATTGACCGTGCAGCAACTGTCTTCTCCTATAACTGGAATAGATAGCTTAAAAAGCAGCGATGAACCTATAGGGTACCAAGTGGGTTCATTTGCAGAACGTTATTTGAGCGAAGACATCGGAATCTCTAAATCTAGGCTTGTTCCTCTGGGATCTCCCGAAGCATATGCTAAGGCACTCCAACTTGGTCCTAAAAATGGAGGCGTTGCTGCTGTTGTTGACGAACGACCCTACGTGGAGATCTTCTTATCAACCCAGTGCACATTCAGGGTAGTAGGGCGGGAGTTCACCAGAAGTGGCTGGGGGTTTGCATTCCCTCGGGATTCCCCTTTGGCTGTTGATTTGTCAACTACAATTCTACAACTTTCCGAAAATGGTGATCTGCAGCGGATTCACGATAAGTGGCTCATACGAAGTGGGTGCAGTTTAGATAATGCCGAAATCGAATCAGATCGGCTTCAACTTAAAAGCTTCTGGGGTCTCTATCTCATTTGTGGGATAGCTTGCTTTCTTGctctttttatatactttctGCAGATTATGCTGCGGTTACGGCATTCTGCTCCTACACAACCTGCTCCCAATGTTAGCTCACGTTTCCATAGATTTCTTTCGTTAATTGACGAGAAAGAAGACCAATCAAAgagtggaagaagaaaaagggctCAAGTTGAAGGATCGGAAGAGCATTTGGGTAGGCTTCCCAAGAGAATGCAAACAGAGACGAGTGCTTCCTTTCGACTCCAAcagttaattgatta 2831 0.4235 MQASAYRMNLFGFVCGRGLLLLLLLFWGLSVSPFYVLCENINISRPAVAHIGAIFTFDSTIGKVAKIAMEEAVKDVNSNASILRGTKLALSTQNSNCSGFVGMVQALRFMETDVVAIIGPQSSVVAHIISHIANELQVPLLSFAATDPTLSSLQFPYFVRTTQSDLFQMSAVAEIVDYYGWKDIIAIFVDDEYGRNGVSALDDQLAGKRCRISHKAGIKSGPGVDRGEIMDLLVKIALMQSRVIVVHVNVDSGFMIFNVAHYLGMLGNGYVWIATDWLSSVLDSTSLSSQMMDSLQGVVVLRQHTPDSDRKRAFFSRWNKLTGGGASLGLHPYGLYAYDSIWLVAHALDAFFNQGGTISFSNDSRIQGAAKGNLNLEAMSIFDDGQLLLNKILESNFVGLTGRMKFDSDKSLVRPAYDIINVVGTGFRRVGYWCNYSGLSVVPPETLYTRPPNRSSANQQLHSVIWPGDTLSKPRGWVFPSNGKQLRIGVPIRVSYREFVSPIRGTDMFKGFCIDVFTAAVNLLPYAVPFHFVPFGDGHQNPSYTQLINLITAGYLDGAVGDIAIVTNRTKIVDFTQPYAASGLVVVAPFKKINSGGWSFLRPFTPLMWIVTLSFFFFVGIVVWSLEHRINDEFRGPPKQQIITILWFSLSTLFFAHRENTMSTLGRLVLLLWLFVVLIINSSYTASLTSILTVQQLSSPITGIDSLKSSDEPIGYQVGSFAERYLSEDIGISKSRLVPLGSPEAYAKALQLGPKNGGVAAVVDERPYVEIFLSTQCTFRVVGREFTRSGWGFAFPRDSPLAVDLSTTILQLSENGDLQRIHDKWLIRSGCSLDNAEIESDRLQLKSFWGLYLICGIACFLALFIYFLQIMLRLRHSAPTQPAPNVSSRFHRFLSLIDEKEDQSKSGRRKRAQVEGSEEHLGRLPKRMQTETSASFRLQQLID 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01017 943 Gene3D - 67 414 - -
Bva10g01017 943 Pfam Receptor family ligand binding region 67 424 IPR001828 -
Bva10g01017 943 MobiDBLite consensus disorder prediction 900 926 - -
Bva10g01017 943 Pfam Ligand-gated ion channel 827 859 IPR001320 GO:0015276|GO:0016020
Bva10g01017 943 Gene3D - 480 594 - -
Bva10g01017 943 SUPERFAMILY Periplasmic binding protein-like I 45 478 IPR028082 -
Bva10g01017 943 MobiDBLite consensus disorder prediction 900 934 - -
Bva10g01017 943 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 122 150 - -
Bva10g01017 943 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 337 349 - -
Bva10g01017 943 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 62 78 - -
Bva10g01017 943 Pfam Bacterial extracellular solute-binding proteins, family 3 508 826 IPR001638 -
Bva10g01017 943 CDD GluR_Plant 484 826 - -
Bva10g01017 943 Gene3D - 758 791 - -
Bva10g01017 943 SUPERFAMILY Periplasmic binding protein-like II 463 826 - -
Bva10g01017 943 Gene3D - 595 724 - -
Bva10g01017 943 PANTHER GLUTAMATE RECEPTOR 3.3 37 932 - -
Bva10g01017 943 Gene3D - 164 439 - -
Bva10g01017 943 PRINTS Metabotropic glutamate GPCR signature 117 143 IPR000337 GO:0004930|GO:0007186|GO:0016021
Bva10g01017 943 PRINTS Metabotropic glutamate GPCR signature 149 168 IPR000337 GO:0004930|GO:0007186|GO:0016021
Bva10g01017 943 PRINTS Metabotropic glutamate GPCR signature 168 184 IPR000337 GO:0004930|GO:0007186|GO:0016021
Bva10g01017 943 PRINTS Metabotropic glutamate GPCR signature 184 201 IPR000337 GO:0004930|GO:0007186|GO:0016021
Bva10g01017 943 SMART GluR_14 487 828 IPR001320 GO:0015276|GO:0016020
Bva10g01017 943 PIRSF IGluLR_plant 17 939 IPR017103 -
Bva10g01017 943 Gene3D - 792 825 - -
Bva10g01017 943 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 37 932 - -
Bva10g01017 943 CDD PBP1_GABAb_receptor_plant 50 443 IPR044440 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01017 Bva-Chr10 7446629 7451460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01017 44 917 Ion Channels AT1G42540 67.379 0.0 1259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01017 K05387 - gmx:100777478 1423.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01017 10 7446629 7451460 Bva10g01017 10 7446629 7451460 ECH